ATTED-II : GeneCoexpression result

Species	Gene	Description
tae-r.2	123138340	probable RNA-binding protein ARP1
osa-u.5	4330772	probable RNA-binding protein ARP1
osa-u.5	4340517	probable RNA-binding protein ARP1
zma-u.5	100280521	RNA-binding region-containing protein 1
zma-u.5	100279918	putative RNA-binding protein ARP1
zma-u.5	100381763	uncharacterized LOC100381763
ath-u.5	AT1G22330	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT1G78260	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100811977	RNA recognition domain-containing protein
gma-u.5	100794651	RNA-binding protein 38
gma-u.5	100787086	RNA-binding protein 38
sly-u.5	101258063	uncharacterized LOC101258063
vvi-u.5	100253997	uncharacterized LOC100253997
ppo-u.5	7461784	uncharacterized LOC7461784
mtr-u.5	11430239	RNA-binding protein 38

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(4004 genes)

IEA

Protein

XP_044414243.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_044414243.1)

Subcellular
localization
TargetP

chlo 6, other 3

(predict for XP_044414243.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123138340	osa-u.5 for 4330772	osa-u.5 for 4340517	zma-u.5 for 100280521	zma-u.5 for 100279918	zma-u.5 for 100381763	ath-u.5 for AT1G22330	ath-u.5 for AT1G78260	gma-u.5 for 100811977	gma-u.5 for 100794651	gma-u.5 for 100787086	sly-u.5 for 101258063	vvi-u.5 for 100253997	ppo-u.5 for 7461784	mtr-u.5 for 11430239

Ortholog

Ortholog ID: 3518

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

RNA-binding protein 38

probable RNA-binding protein ARP1

RNA-binding protein 24-like

probable RNA-binding protein ARP1

RNA-binding protein 24

probable RNA-binding protein ARP1

uncharacterized LOC100381763

putative RNA-binding protein ARP1

RNA-binding protein 38-like

RNA-binding (RRM/RBD/RNP motifs) family protein

RNA-binding protein 38

uncharacterized LOC101258063

RNA-binding protein 24

probable RNA-binding protein ARP1

uncharacterized LOC100253997

uncharacterized LOC7461784

RNA-binding protein 38

RNA-binding protein 24

RNA-binding protein 24-like

uncharacterized LOC102619869

uncharacterized LOC107775859

uncharacterized LOC107810518

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00061	Fatty acid biosynthesis	2
tae01040	Biosynthesis of unsaturated fatty acids	2
tae01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	4
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03410	Base excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00460	Cyanoamino acid metabolism	2
cit00500	Starch and sucrose metabolism	2
cit00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

123152643

123169800

123412021

123403375

100846923

100841108

4330772

4340517

100381763

100279918

110434867

844161

838839

100794651

100788516

101258063

103830531

103829336

100253997

7461784

11430239

107957765

107901464

106354706

106353442

102591750

102619869

107775859

107810518

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 123138340 (tae-r.2 coexpression data)

Top 50 enrichment test to 123138340 (tae-r.2 coexpression data)


Species	tae	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre
Paralog	1	2	3	2	3	1	1	1	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123138340 (tae-r.2 coexpression data)

Top 50 enrichment test to 123138340 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**