ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123156902	deSI-like protein At4g17486
tae-r.2	123084936	deSI-like protein At4g17486
tae-r.2	123054257	deSI-like protein At4g17486
tae-r.2	123093108	deSI-like protein At4g17486
hvu-r.1	123427580	deSI-like protein At4g17486
hvu-r.1	123450141	deSI-like protein At4g17486
hvu-r.1	123411190	deSI-like protein At4g17486
bdi-r.1	100844954	deSI-like protein At4g17486
bdi-r.1	100843033	deSI-like protein At4g17486
bdi-r.1	100838757	deSI-like protein At4g17486
osa-u.5	4341303	deSI-like protein At4g17486
osa-u.5	4336575	deSI-like protein At4g17486
zma-u.5	100282449	EREBP-4 like protein
zma-u.5	100283076	EREBP-4 like protein
zma-u.5	100193170	uncharacterized LOC100193170
sbi-r.1	8081565	deSI-like protein At4g17486
sbi-r.1	8081883	deSI-like protein At4g17486
sbi-r.1	8073965	deSI-like protein At4g17486
ath-u.5	AT2G25190	PPPDE putative thiol peptidase family protein
ath-u.5	AT4G17486	PPPDE putative thiol peptidase family protein
ath-u.5	AT5G25170	PPPDE putative thiol peptidase family protein
gma-u.5	100804405	UPF0326 protein At4g17486-like
gma-u.5	100810627	deSI-like protein At4g17486
gma-u.5	100814439	deSI-like protein At4g17486
sly-u.5	101243834	PPPDE putative thiol peptidase family protein
sly-u.5	101265568	deSI-like protein At4g17486
sly-u.5	101244056	deSI-like protein At4g17486
bra-r.6	103874384	deSI-like protein At4g17486
bra-r.6	103868706	deSI-like protein At4g17486
bra-r.6	103864614	deSI-like protein At4g17486
vvi-u.5	100245551	deSI-like protein At4g17486
ppo-u.5	7461199	deSI-like protein At4g17486
ppo-u.5	7458407	deSI-like protein At4g17486
ppo-u.5	7497634	deSI-like protein At4g17486
mtr-u.5	25486750	deSI-like protein At4g17486
mtr-u.5	25482693	deSI-like protein At4g17486
mtr-u.5	25482110	deSI-like protein At4g17486
ghi-r.1	107918039	deSI-like protein At4g17486
ghi-r.1	107922552	deSI-like protein At4g17486
ghi-r.1	107894191	deSI-like protein At4g17486
bna-r.1	106348518	deSI-like protein At4g17486
bna-r.1	106353379	deSI-like protein At4g17486
sot-r.1	102597047	deSI-like protein At4g17486
sot-r.1	102582965	deSI-like protein At4g17486
sot-r.1	102591447	deSI-like protein At4g17486
cit-r.1	102617015	deSI-like protein At4g17486
cit-r.1	102625145	deSI-like protein At4g17486
cit-r.1	102620287	deSI-like protein At4g17486
nta-r.1	107764194	deSI-like protein At4g17486
nta-r.1	107768481	deSI-like protein At4g17486
nta-r.1	107785758	deSI-like protein At4g17486
cre-r.1	CHLRE_17g698100v5	uncharacterized protein

Top 50 coexpressed genes to 123156902 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123156902 (tae-r.2 coexpression data)

CoexMap"123156902"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0016579 [list] [network] protein deubiquitination

(280 genes)

IEA

GO CC

GO MF

GO:0101005 [list] [network] deubiquitinase activity

(281 genes)

IEA

Protein

XP_044431029.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 2, extr 2, nucl_plas 2

(predict for XP_044431029.1)

Subcellular
localization
TargetP

other 8

(predict for XP_044431029.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123156902	tae-r.2 for 123084936	tae-r.2 for 123054257	tae-r.2 for 123093108	hvu-r.1 for 123427580	hvu-r.1 for 123450141	hvu-r.1 for 123411190	bdi-r.1 for 100844954	bdi-r.1 for 100843033	bdi-r.1 for 100838757	osa-u.5 for 4341303	osa-u.5 for 4336575	zma-u.5 for 100282449	zma-u.5 for 100283076	zma-u.5 for 100193170	sbi-r.1 for 8081565	sbi-r.1 for 8081883	sbi-r.1 for 8073965	ath-u.5 for AT2G25190	ath-u.5 for AT4G17486	ath-u.5 for AT5G25170	gma-u.5 for 100804405	gma-u.5 for 100810627	gma-u.5 for 100814439	sly-u.5 for 101243834	sly-u.5 for 101265568	sly-u.5 for 101244056	bra-r.6 for 103874384	bra-r.6 for 103868706	bra-r.6 for 103864614	vvi-u.5 for 100245551	ppo-u.5 for 7461199	ppo-u.5 for 7458407	ppo-u.5 for 7497634	mtr-u.5 for 25486750	mtr-u.5 for 25482693	mtr-u.5 for 25482110	ghi-r.1 for 107918039	ghi-r.1 for 107922552	ghi-r.1 for 107894191	bna-r.1 for 106348518	bna-r.1 for 106353379	sot-r.1 for 102597047	sot-r.1 for 102582965	sot-r.1 for 102591447	cit-r.1 for 102617015	cit-r.1 for 102625145	cit-r.1 for 102620287	nta-r.1 for 107764194	nta-r.1 for 107768481	nta-r.1 for 107785758	cre-r.1 for CHLRE_17g698100v5

Ortholog

Ortholog ID: 227

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

deSI-like protein At4g17486

EREBP-4 like protein

uncharacterized LOC100191813

uncharacterized LOC100216975

deSI-like protein At4g17486

PPPDE putative thiol peptidase family protein

deSI-like protein At4g17486

UPF0326 protein At4g17486-like

deSI-like protein At4g17486

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	3
tae00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
tae01230	Biosynthesis of amino acids	3
tae00190	Oxidative phosphorylation	2
tae00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00510	N-Glycan biosynthesis	2
tae00513	Various types of N-glycan biosynthesis	2
tae04141	Protein processing in endoplasmic reticulum	2
tae04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3
hvu04120	Ubiquitin mediated proteolysis	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	4
zma00561	Glycerolipid metabolism	2
zma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	2
sbi03013	Nucleocytoplasmic transport	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00270	Cysteine and methionine metabolism	3
gma01200	Carbon metabolism	3
gma00020	Citrate cycle (TCA cycle)	2
gma00566	Sulfoquinovose metabolism	2
gma00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04130	SNARE interactions in vesicular transport	3
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2
bra04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	3
ppo04120	Ubiquitin mediated proteolysis	3
ppo00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	3
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	10
ghi03083	Polycomb repressive complex	6
ghi04141	Protein processing in endoplasmic reticulum	6
ghi00480	Glutathione metabolism	2
ghi00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03272	Virion - Hepatitis viruses	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna04136	Autophagy - other	4
bna04382	Cornified envelope formation	4
bna04130	SNARE interactions in vesicular transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	3
sot04141	Protein processing in endoplasmic reticulum	3
sot03040	Spliceosome	2
sot04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	2
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

123144992

123164998

123098381

123450141

123449420

123401249

100844954

100843033

100838757

4341303

4331955

4331282

100282449

100191813

100216975

8081565

8061979

8083353

827462

832588

844408

100817929

100809235

100786432

101265568

101244056

101252386

103874384

103868706

103864614

100245551

100252589

7493418

7471646

18107652

11433509

11443239

25491272

107929378

107888399

107940101

125609246

106401816

102582965

102600972

102604322

102625145

102615322

107785758

107807020

107829525

5717355

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Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	3	2	3	3	3	3	3	3	1	3	3	3	2	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123156902 (tae-r.2 coexpression data)

Top 50 enrichment test to 123156902 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**