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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123167992   polyadenylation and cleavage factor homolog 4 
 tae-r.2   123146932   polyadenylation and cleavage factor homolog 4 
 tae-r.2   123160793   polyadenylation and cleavage factor homolog 4 
 hvu-r.1   123412288   polyadenylation and cleavage factor homolog 4-like 
 bdi-r.1   100826665   polyadenylation and cleavage factor homolog 4 
 osa-u.5   4344833   polyadenylation and cleavage factor homolog 4 
 zma-u.5   103653026   polyadenylation and cleavage factor homolog 4 
 zma-u.5   100280286   uncharacterized LOC100280286 
 sbi-r.1   8071118   uncharacterized LOC8071118 
 ath-u.5   PCFS4   PCF11P-similar protein 4 
 gma-u.5   100794796   polyadenylation and cleavage factor homolog 4 
 gma-u.5   100787354   polyadenylation and cleavage factor homolog 4 
 sly-u.5   101252266   polyadenylation and cleavage factor homolog 4 
 bra-r.6   103839806   polyadenylation and cleavage factor homolog 4 
 vvi-u.5   100255600   polyadenylation and cleavage factor homolog 4 
 ppo-u.5   7485427   polyadenylation and cleavage factor homolog 4 
 ppo-u.5   7479082   polyadenylation and cleavage factor homolog 4 
 mtr-u.5   25495279   polyadenylation and cleavage factor homolog 4 
 ghi-r.1   107961975   polyadenylation and cleavage factor homolog 4 
 ghi-r.1   107901935   polyadenylation and cleavage factor homolog 4 
 bna-r.1   106366877   polyadenylation and cleavage factor homolog 4-like 
 bna-r.1   106415234   polyadenylation and cleavage factor homolog 4 
 sot-r.1   102582930   polyadenylation and cleavage factor homolog 4 
 cit-r.1   102631201   polyadenylation and cleavage factor homolog 4 
 nta-r.1   107759140   polyadenylation and cleavage factor homolog 4-like 
 nta-r.1   107812177   polyadenylation and cleavage factor homolog 4-like 
 cre-r.1   CHLRE_06g265602v5   uncharacterized protein 

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Top 50 coexpressed genes to 123167992 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123167992 (tae-r.2 coexpression data)

CoexMap"123167992"


taeLOC123167992 | Entrez gene ID : 123167992    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 1 2 1 1 2 1 1 1 2 1 2 2 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes03015 [list] [network] mRNA surveillance pathway (388 genes)
GO BP
GO:0006369 [list] [network] termination of RNA polymerase II transcription  (8 genes)  IEA  
GO:0031124 [list] [network] mRNA 3'-end processing  (56 genes)  IEA  
GO CC
GO:0005849 [list] [network] mRNA cleavage factor complex  (43 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13575 genes)  IEA  
GO MF
GO:0000993 [list] [network] RNA polymerase II complex binding  (71 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (862 genes)  IEA  
Protein XP_044441788.1 [sequence] [blastp]
XP_044441789.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_044441788.1)
nucl 7,  chlo 2  (predict for XP_044441789.1)
Subcellular
localization
TargetP
mito 3  (predict for XP_044441788.1)
mito 3  (predict for XP_044441789.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123167992
tae-r.2
for
123146932
tae-r.2
for
123160793
hvu-r.1
for
123412288
bdi-r.1
for
100826665
osa-u.5
for
4344833
zma-u.5
for
103653026
zma-u.5
for
100280286
sbi-r.1
for
8071118
ath-u.5
for
PCFS4
gma-u.5
for
100794796
gma-u.5
for
100787354
sly-u.5
for
101252266
bra-r.6
for
103839806
vvi-u.5
for
100255600
ppo-u.5
for
7485427
ppo-u.5
for
7479082
mtr-u.5
for
25495279
ghi-r.1
for
107961975
ghi-r.1
for
107901935
bna-r.1
for
106366877
bna-r.1
for
106415234
sot-r.1
for
102582930
cit-r.1
for
102631201
nta-r.1
for
107759140
nta-r.1
for
107812177
cre-r.1
for
CHLRE_06g265602v5


Ortholog ID: 8525
Species tae tae tae hvu bdi osa zma zma sbi ath gma gma sly bra vvi ppo ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC123167992 LOC123146932 LOC123160793 LOC123412288 LOC100826665 LOC4344833 LOC103653026 LOC100280286 LOC8071118 PCFS4 LOC100794796 LOC100787354 LOC101252266 LOC103839806 LOC100255600 LOC7485427 LOC7479082 LOC25495279 LOC107961975 LOC107901935 LOC106366877 LOC106415234 LOC102582930 LOC102631201 LOC107759140 LOC107812177 CHLRE_06g265602v5
Function* polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4-like polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 uncharacterized LOC100280286 uncharacterized LOC8071118 PCF11P-similar protein 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4-like polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4-like polyadenylation and cleavage factor homolog 4-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 4
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03082 ATP-dependent chromatin remodeling 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 3
mtr03013 Nucleocytoplasmic transport 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 6
ghi03250 Viral life cycle - HIV-1 6
ghi03460 Fanconi anemia pathway 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 6
ghi03250 Viral life cycle - HIV-1 6
ghi03460 Fanconi anemia pathway 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03018 RNA degradation 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03018 RNA degradation 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123167992 123146932 123160793 123412288 100826665 4344833 103653026 100280286 8071118 825827 100794796 100787354 101252266 103839806 100255600 7485427 7479082 25495279 107961975 107901935 106366877 106415234 102582930 102631201 107759140 107812177 5721951
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