ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123179759	paired amphipathic helix protein Sin3-like 4
tae-r.2	123184001	paired amphipathic helix protein Sin3-like 4
tae-r.2	123059752	paired amphipathic helix protein Sin3-like 3
tae-r.2	123068176	paired amphipathic helix protein Sin3-like 3
hvu-r.1	123442356	paired amphipathic helix protein Sin3-like 3
hvu-r.1	123430374	paired amphipathic helix protein Sin3-like 4
bdi-r.1	100833378	paired amphipathic helix protein Sin3-like 4
bdi-r.1	100824976	paired amphipathic helix protein Sin3-like 3
osa-u.5	4326133	paired amphipathic helix protein Sin3-like 3
osa-u.5	4337520	paired amphipathic helix protein Sin3-like 4
zma-u.5	103649898	paired amphipathic helix protein Sin3-like 3
zma-u.5	103634740	paired amphipathic helix protein Sin3-like 4
zma-u.5	103629312	paired amphipathic helix protein Sin3-like 4
sbi-r.1	8065349	paired amphipathic helix protein Sin3-like 5
sbi-r.1	8079088	paired amphipathic helix protein Sin3-like 3
ath-u.5	SNL1	SIN3-like 1
ath-u.5	SNL2	SIN3-like 2
ath-u.5	SNL3	SIN3-like 3
gma-u.5	100812405	paired amphipathic helix protein Sin3-like 2
gma-u.5	100811928	paired amphipathic helix protein Sin3-like 4
gma-u.5	100807181	paired amphipathic helix protein Sin3-like 2
sly-u.5	101261776	paired amphipathic helix protein Sin3-like 2
sly-u.5	101264278	paired amphipathic helix protein Sin3-like 2
sly-u.5	101253486	paired amphipathic helix protein Sin3-like 4
bra-r.6	103856106	paired amphipathic helix protein Sin3-like 2
bra-r.6	103850963	paired amphipathic helix protein Sin3-like 2
bra-r.6	103831552	paired amphipathic helix protein Sin3-like 4
vvi-u.5	100254234	paired amphipathic helix protein Sin3-like 2
vvi-u.5	100243213	paired amphipathic helix protein Sin3-like 4
ppo-u.5	7460792	paired amphipathic helix protein Sin3-like 4
ppo-u.5	7469070	paired amphipathic helix protein Sin3-like 4
ppo-u.5	18095308	paired amphipathic helix protein Sin3-like 2
mtr-u.5	11421085	paired amphipathic helix protein Sin3-like 2
mtr-u.5	11408135	paired amphipathic helix protein Sin3-like 4
mtr-u.5	11411021	paired amphipathic helix protein Sin3-like 3
ghi-r.1	107909606	paired amphipathic helix protein Sin3-like 4
ghi-r.1	107893729	paired amphipathic helix protein Sin3-like 2
ghi-r.1	107911795	paired amphipathic helix protein Sin3-like 2
bna-r.1	125594098	paired amphipathic helix protein Sin3-like 2
bna-r.1	111212934	paired amphipathic helix protein Sin3-like 1
bna-r.1	111204298	paired amphipathic helix protein Sin3-like 2
sot-r.1	102602535	paired amphipathic helix protein Sin3-like 2
sot-r.1	102584539	paired amphipathic helix protein Sin3-like 4
sot-r.1	102583006	paired amphipathic helix protein Sin3-like 2
cit-r.1	102612187	paired amphipathic helix protein Sin3-like 4
cit-r.1	102607961	paired amphipathic helix protein Sin3-like 2
nta-r.1	107772857	paired amphipathic helix protein Sin3-like 2
nta-r.1	107775868	paired amphipathic helix protein Sin3-like 3
nta-r.1	107805514	paired amphipathic helix protein Sin3-like 2
cre-r.1	CHLRE_03g180800v5	uncharacterized protein

Top 50 coexpressed genes to 123179759 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123179759 (tae-r.2 coexpression data)

CoexMap"123179759"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0000122 [list] [network] negative regulation of transcription by RNA polymerase II

(33 genes)

IEA

GO CC

GO:0000118 [list] [network] histone deacetylase complex	(73 genes)	IEA
GO:0000785 [list] [network] chromatin	(928 genes)	IEA

GO MF

GO:0003714 [list] [network] transcription corepressor activity

(87 genes)

IEA

Protein

XP_044447569.1 [sequence] [blastp]
XP_044447570.1 [sequence] [blastp]
XP_044447571.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, chlo 1	(predict for XP_044447569.1)
nucl 8, chlo 1	(predict for XP_044447570.1)
nucl 8, chlo 1	(predict for XP_044447571.1)

Subcellular
localization
TargetP

other 6	(predict for XP_044447569.1)
other 6	(predict for XP_044447570.1)
other 6	(predict for XP_044447571.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123179759	tae-r.2 for 123184001	tae-r.2 for 123059752	tae-r.2 for 123068176	hvu-r.1 for 123442356	hvu-r.1 for 123430374	bdi-r.1 for 100833378	bdi-r.1 for 100824976	osa-u.5 for 4326133	osa-u.5 for 4337520	zma-u.5 for 103649898	zma-u.5 for 103634740	zma-u.5 for 103629312	sbi-r.1 for 8065349	sbi-r.1 for 8079088	ath-u.5 for SNL1	ath-u.5 for SNL2	ath-u.5 for SNL3	gma-u.5 for 100812405	gma-u.5 for 100811928	gma-u.5 for 100807181	sly-u.5 for 101261776	sly-u.5 for 101264278	sly-u.5 for 101253486	bra-r.6 for 103856106	bra-r.6 for 103850963	bra-r.6 for 103831552	vvi-u.5 for 100254234	vvi-u.5 for 100243213	ppo-u.5 for 7460792	ppo-u.5 for 7469070	ppo-u.5 for 18095308	mtr-u.5 for 11421085	mtr-u.5 for 11408135	mtr-u.5 for 11411021	ghi-r.1 for 107909606	ghi-r.1 for 107893729	ghi-r.1 for 107911795	bna-r.1 for 125594098	bna-r.1 for 111212934	bna-r.1 for 111204298	sot-r.1 for 102602535	sot-r.1 for 102584539	sot-r.1 for 102583006	cit-r.1 for 102612187	cit-r.1 for 102607961	nta-r.1 for 107772857	nta-r.1 for 107775868	nta-r.1 for 107805514	cre-r.1 for CHLRE_03g180800v5

Ortholog

Ortholog ID: 1625

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

SNL1

SNL3

SNL4

Function^*

paired amphipathic helix protein Sin3-like 3

paired amphipathic helix protein Sin3-like 4

paired amphipathic helix protein Sin3-like 3

paired amphipathic helix protein Sin3-like 4

paired amphipathic helix protein Sin3-like 3

paired amphipathic helix protein Sin3-like 4

paired amphipathic helix protein Sin3-like 5

paired amphipathic helix protein Sin3-like 3

SIN3-like 1

SIN3-like 3

SIN3-like 4

paired amphipathic helix protein Sin3-like 2

paired amphipathic helix protein Sin3-like 4

paired amphipathic helix protein Sin3-like 2

paired amphipathic helix protein Sin3-like 4

paired amphipathic helix protein Sin3-like 1

paired amphipathic helix protein Sin3-like 4

paired amphipathic helix protein Sin3-like 2

paired amphipathic helix protein Sin3-like 4

paired amphipathic helix protein Sin3-like 2

paired amphipathic helix protein Sin3-like 4

paired amphipathic helix protein Sin3-like 3

paired amphipathic helix protein Sin3-like 2

paired amphipathic helix protein Sin3-like 4

paired amphipathic helix protein Sin3-like 2

paired amphipathic helix protein Sin3-like 4

paired amphipathic helix protein Sin3-like 2

paired amphipathic helix protein Sin3-like 4

paired amphipathic helix protein Sin3-like 2

paired amphipathic helix protein Sin3-like 4

paired amphipathic helix protein Sin3-like 2

paired amphipathic helix protein Sin3-like 3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae00500	Starch and sucrose metabolism	2
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	2
tae03010	Ribosome	2
tae00770	Pantothenate and CoA biosynthesis	2
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	3
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00562	Inositol phosphate metabolism	3
zma04070	Phosphatidylinositol signaling system	2
zma03083	Polycomb repressive complex	2
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00562	Inositol phosphate metabolism	2
zma04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03250	Viral life cycle - HIV-1	2
sbi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	3
ath03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2
ath03083	Polycomb repressive complex	2
ath03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2
gma00564	Glycerophospholipid metabolism	2
gma00565	Ether lipid metabolism	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma03082	ATP-dependent chromatin remodeling	2
gma00564	Glycerophospholipid metabolism	2
gma00565	Ether lipid metabolism	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	4
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	4
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00562	Inositol phosphate metabolism	2
ghi04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	2
bna04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	2
bna04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00310	Lysine degradation	2
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	6
nta04070	Phosphatidylinositol signaling system	4
nta04145	Phagosome	4

Expression

Expression pattern

Entrez Gene ID^*

123059752

123068176

123076722

123442356

123430374

100833378

100824976

4326133

4337520

103649898

103634740

103629312

8065349

8079088

821265

839032

843342

100812405

100807181

100813398

101261776

101264278

101253486

103831552

103850076

103830897

100254234

100243213

7460792

7469070

18095308

11408135

11411021

25501504

107939074

107886630

107945780

106353947

106429554

106431788

102602535

102584539

102583006

102612187

102607961

107805514

107766319

107809360

5728474

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Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	2	2	2	3	2	3	3	3	3	2	3	3	3	3	3	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123179759 (tae-r.2 coexpression data)

Top 50 enrichment test to 123179759 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**