ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	4328284	uncharacterized LOC4328284
zma-u.5	103654921	splicing factor 3B subunit 1
zma-u.5	100277544	antigenic determinant of rec-A protein, mRNA
ath-u.5	AT5G64270	splicing factor
gma-u.5	100810599	splicing factor 3B subunit 1
gma-u.5	100785889	splicing factor 3B subunit 1
sly-u.5	101252641	uncharacterized LOC101252641
vvi-u.5	100243186	uncharacterized LOC100243186
ppo-u.5	7461689	uncharacterized LOC7461689
ppo-u.5	7461262	uncharacterized LOC7461262
mtr-u.5	11424216	splicing factor 3B subunit 1

functional annotation

KEGG

hvg03040 [list] [network] Spliceosome (365 genes)

GO BP

GO:0000245 [list] [network] spliceosomal complex assembly

(23 genes)

IEA

GO CC

GO:0005689 [list] [network] U12-type spliceosomal complex	(19 genes)	IEA
GO:0071004 [list] [network] U2-type prespliceosome	(23 genes)	IEA
GO:0005686 [list] [network] U2 snRNP	(24 genes)	IEA
GO:0071013 [list] [network] catalytic step 2 spliceosome	(70 genes)	IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(308 genes)

IEA

Protein

XP_044957259.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, vacu 1, E.R. 1, E.R._vacu 1

(predict for XP_044957259.1)

Subcellular
localization
TargetP

mito 5, other 3

(predict for XP_044957259.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4328284	zma-u.5 for 103654921	zma-u.5 for 100277544	ath-u.5 for AT5G64270	gma-u.5 for 100810599	gma-u.5 for 100785889	sly-u.5 for 101252641	vvi-u.5 for 100243186	ppo-u.5 for 7461689	ppo-u.5 for 7461262	mtr-u.5 for 11424216

Ortholog ID: 6687

Species

hvu

tae

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

splicing factor 3B subunit 1

uncharacterized LOC4328284

splicing factor 3B subunit 1

antigenic determinant of rec-A protein, mRNA

splicing factor 3B subunit 1

splicing factor

splicing factor 3B subunit 1

uncharacterized LOC101252641

splicing factor 3B subunit 1

uncharacterized LOC100243186

uncharacterized LOC7461689

uncharacterized LOC7461262

splicing factor 3B subunit 1

splicing factor 3B subunit 1-like

splicing factor 3B subunit 1

splicing factor 3B subunit 1-like

uncharacterized LOC102613662

uncharacterized LOC107769132

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4
zma00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	6
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03420	Nucleotide excision repair	2
ath04120	Ubiquitin mediated proteolysis	2
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	9
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo04712	Circadian rhythm - plant	2
ppo03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4
mtr00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi00270	Cysteine and methionine metabolism	2
ghi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	5
ghi00270	Cysteine and methionine metabolism	2
ghi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna00562	Inositol phosphate metabolism	2
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	7
nta00480	Glutathione metabolism	2
nta03013	Nucleocytoplasmic transport	2
nta03030	DNA replication	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	8
cre03020	RNA polymerase	3
cre03420	Nucleotide excision repair	3

Expression

Expression pattern

Entrez Gene ID^*

123401091

123110147

123136263

100839729

100835688

4328284

103654921

100277544

8069963

836548

100810599

100785889

101252641

103873845

103837520

100243186

7461689

7461262

11424216

107929397

107929017

111197962

111204634

102582680

107059135

102613662

107769132

5726113

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4328284 (osa-u.5 coexpression data)

Top 50 enrichment test to 4328284 (osa-u.5 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	2	1	2	1	1	2	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4328284 (osa-u.5 coexpression data)

Top 50 enrichment test to 4328284 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**