ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	4347892	uncharacterized LOC4347892
osa-u.5	4338782	uncharacterized LOC4338782
zma-u.5	100282422	nucleic acid binding protein
zma-u.5	103627088	R3H domain-containing protein 1-like
zma-u.5	103647263	Single-stranded nucleic acid binding R3H protein
ath-u.5	AT2G40960	Single-stranded nucleic acid binding R3H protein
ath-u.5	AT3G10770	Single-stranded nucleic acid binding R3H protein
ath-u.5	AT3G56680	Single-stranded nucleic acid binding R3H protein
gma-u.5	100814835	R3H and SUZ domain-containing protein
gma-u.5	100799336	uncharacterized LOC100799336
gma-u.5	100796710	R3H domain-containing protein 2
sly-u.5	101245604	uncharacterized LOC101245604
sly-u.5	101264077	uncharacterized LOC101264077
vvi-u.5	100255059	uncharacterized LOC100255059
vvi-u.5	100251643	uncharacterized LOC100251643
ppo-u.5	7479653	uncharacterized LOC7479653
ppo-u.5	7464072	uncharacterized LOC7464072
ppo-u.5	7486913	uncharacterized LOC7486913
mtr-u.5	11422947	cAMP-regulated phosphoprotein 21
mtr-u.5	11415193	R3H domain-containing protein 2
mtr-u.5	11422184	uncharacterized LOC11422184

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0046983 [list] [network] protein dimerization activity	(590 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(3739 genes)	IEA

Protein

XP_044958042.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, nucl 1, cyto 1, mito 1, cyto_nucl 1

(predict for XP_044958042.1)

Subcellular
localization
TargetP

scret 7

(predict for XP_044958042.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4347892	osa-u.5 for 4338782	zma-u.5 for 100282422	zma-u.5 for 103627088	zma-u.5 for 103647263	ath-u.5 for AT2G40960	ath-u.5 for AT3G10770	ath-u.5 for AT3G56680	gma-u.5 for 100814835	gma-u.5 for 100799336	gma-u.5 for 100796710	sly-u.5 for 101245604	sly-u.5 for 101264077	vvi-u.5 for 100255059	vvi-u.5 for 100251643	ppo-u.5 for 7479653	ppo-u.5 for 7464072	ppo-u.5 for 7486913	mtr-u.5 for 11422947	mtr-u.5 for 11415193	mtr-u.5 for 11422184

Ortholog

Ortholog ID: 1846

Species

hvu

tae

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

R3H domain-containing protein 2-like

60S ribosomal protein L10a

R3H domain-containing protein 2

uncharacterized LOC100835943

uncharacterized LOC4338782

uncharacterized LOC4347892

Single-stranded nucleic acid binding R3H protein

nucleic acid binding protein

uncharacterized LOC110430213

R3H domain-containing protein 1-like

Single-stranded nucleic acid binding R3H protein

R3H domain-containing protein 2

R3H domain-containing protein 1

uncharacterized LOC101245604

uncharacterized LOC101264077

protein encore

uncharacterized LOC103847318

uncharacterized LOC100255059

uncharacterized LOC100251643

uncharacterized LOC7479653

uncharacterized LOC7464072

R3H domain-containing protein 2

cAMP-regulated phosphoprotein 21

uncharacterized LOC107925870

uncharacterized LOC121209482

uncharacterized LOC106434592

R3H domain-containing protein 1-like

R3H domain-containing protein 2-like

R3H domain-containing protein 2

uncharacterized LOC102629684

uncharacterized LOC102619616

uncharacterized LOC107817225

uncharacterized LOC107805498

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	3
hvu04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	3
tae00330	Arginine and proline metabolism	3
tae00410	beta-Alanine metabolism	3
tae00770	Pantothenate and CoA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa04144	Endocytosis	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma04712	Circadian rhythm - plant	2
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma04141	Protein processing in endoplasmic reticulum	3
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	5
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi03013	Nucleocytoplasmic transport	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot04141	Protein processing in endoplasmic reticulum	3
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03420	Nucleotide excision repair	2
cit04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2
nta04141	Protein processing in endoplasmic reticulum	2
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	3
nta04712	Circadian rhythm - plant	2
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2

Expression

Expression pattern

Entrez Gene ID^*

123446856

123095587

123090525

100822579

100835943

4338782

4347892

103647263

100282422

110430213

110433016

824835

818696

100796710

100797761

101245604

101264077

103863092

103847318

100255059

100251643

7479653

7464072

11415193

11422947

107925870

121209482

106434592

106381175

102600752

102580050

102629684

102619616

107817225

107805498

5725757

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4347892 (osa-u.5 coexpression data)

Top 50 enrichment test to 4347892 (osa-u.5 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	2	3	3	3	2	2	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4347892 (osa-u.5 coexpression data)

Top 50 enrichment test to 4347892 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**