ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT3G56680	Single-stranded nucleic acid binding R3H protein
ath-r.7	AT3G56680	Single-stranded nucleic acid binding R3H protein
ath-m.9	AT3G56680	Single-stranded nucleic acid binding R3H protein
ath-e.2	AT3G56680	Single-stranded nucleic acid binding R3H protein
ath-m.4.bio	AT3G56680	Single-stranded nucleic acid binding R3H protein
ath-m.4.hor	AT3G56680	Single-stranded nucleic acid binding R3H protein
ath-m.4.lig	AT3G56680	Single-stranded nucleic acid binding R3H protein
ath-m.4.str	AT3G56680	Single-stranded nucleic acid binding R3H protein
ath-m.4.tis	AT3G56680	Single-stranded nucleic acid binding R3H protein
ath-u.5	AT2G40960	Single-stranded nucleic acid binding R3H protein
ath-u.5	AT3G10770	Single-stranded nucleic acid binding R3H protein
ath-u.5	AT5G05100	Single-stranded nucleic acid binding R3H protein
bra-r.6	103870435	cAMP-regulated phosphoprotein 21
bra-r.6	103847318	uncharacterized LOC103847318
bra-r.6	103855609	uncharacterized LOC103855609
bna-r.1	106434592	uncharacterized LOC106434592
bna-r.1	106382986	uncharacterized LOC106382986
bna-r.1	111214992	protein encore
ghi-r.1	107925870	uncharacterized LOC107925870
ghi-r.1	107915691	cAMP-regulated phosphoprotein 21
ghi-r.1	121209482	uncharacterized LOC121209482
cit-r.1	102619616	uncharacterized LOC102619616
cit-r.1	102629684	uncharacterized LOC102629684
gma-u.5	100784326	R3H and SUZ domain-containing protein
gma-u.5	100791122	R3H domain-containing protein 2
gma-u.5	100796710	R3H domain-containing protein 2
vvi-u.5	100255059	uncharacterized LOC100255059
vvi-u.5	100251643	uncharacterized LOC100251643
ppo-u.5	7486913	uncharacterized LOC7486913
ppo-u.5	7479653	uncharacterized LOC7479653
ppo-u.5	18102778	uncharacterized LOC18102778
mtr-u.5	11415193	R3H domain-containing protein 2
mtr-u.5	11422184	uncharacterized LOC11422184
mtr-u.5	11422947	cAMP-regulated phosphoprotein 21
sly-u.5	101245604	uncharacterized LOC101245604
sly-u.5	101264077	uncharacterized LOC101264077
sot-r.1	102580050	R3H domain-containing protein 2
sot-r.1	102599801	uncharacterized LOC102599801
sot-r.1	102600752	R3H domain-containing protein 2-like
nta-r.1	107760960	uncharacterized LOC107760960
nta-r.1	107805498	uncharacterized LOC107805498
nta-r.1	107808326	uncharacterized LOC107808326
osa-u.5	4347892	uncharacterized LOC4347892
osa-u.5	4338782	uncharacterized LOC4338782
zma-u.5	103627088	R3H domain-containing protein 1-like
zma-u.5	103632455	R3H domain-containing protein 1
zma-u.5	103647263	Single-stranded nucleic acid binding R3H protein
tae-r.2	123095587	60S ribosomal protein L10a
tae-r.2	123055602	uncharacterized LOC123055602
tae-r.2	123090525	R3H domain-containing protein 2
hvu-r.1	123442546	uncharacterized LOC123442546
sbi-r.1	110433016	R3H domain-containing protein 1-like
sbi-r.1	110430213	uncharacterized LOC110430213
bdi-r.1	100835943	uncharacterized LOC100835943
bdi-r.1	100822579	R3H domain-containing protein 2
cre-r.1	CHLRE_01g068742v5	uncharacterized protein

Top 50 coexpressed genes to AT3G56680 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G56680 (ath-u.5 coexpression data)

CoexMap"824835"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005737 [list] [network] cytoplasm

(14000 genes)

ISM

GO MF

Protein

NP_191227.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for NP_191227.1)

Subcellular
localization
TargetP

other 8

(predict for NP_191227.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G56680	ath-r.7 for AT3G56680	ath-m.9 for AT3G56680	ath-e.2 for AT3G56680	ath-m.4.bio for AT3G56680	ath-m.4.hor for AT3G56680	ath-m.4.lig for AT3G56680	ath-m.4.str for AT3G56680	ath-m.4.tis for AT3G56680	ath-u.5 for AT2G40960	ath-u.5 for AT3G10770	ath-u.5 for AT5G05100	bra-r.6 for 103870435	bra-r.6 for 103847318	bra-r.6 for 103855609	bna-r.1 for 106434592	bna-r.1 for 106382986	bna-r.1 for 111214992	ghi-r.1 for 107925870	ghi-r.1 for 107915691	ghi-r.1 for 121209482	cit-r.1 for 102619616	cit-r.1 for 102629684	gma-u.5 for 100784326	gma-u.5 for 100791122	gma-u.5 for 100796710	vvi-u.5 for 100255059	vvi-u.5 for 100251643	ppo-u.5 for 7486913	ppo-u.5 for 7479653	ppo-u.5 for 18102778	mtr-u.5 for 11415193	mtr-u.5 for 11422184	mtr-u.5 for 11422947	sly-u.5 for 101245604	sly-u.5 for 101264077	sot-r.1 for 102580050	sot-r.1 for 102599801	sot-r.1 for 102600752	nta-r.1 for 107760960	nta-r.1 for 107805498	nta-r.1 for 107808326	osa-u.5 for 4347892	osa-u.5 for 4338782	zma-u.5 for 103627088	zma-u.5 for 103632455	zma-u.5 for 103647263	tae-r.2 for 123095587	tae-r.2 for 123055602	tae-r.2 for 123090525	hvu-r.1 for 123442546	sbi-r.1 for 110433016	sbi-r.1 for 110430213	bdi-r.1 for 100835943	bdi-r.1 for 100822579	cre-r.1 for CHLRE_01g068742v5

Ortholog

Ortholog ID: 1846

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Single-stranded nucleic acid binding R3H protein

uncharacterized LOC103847318

uncharacterized LOC103859362

protein encore

uncharacterized LOC106434592

uncharacterized LOC106353030

R3H domain-containing protein 1-like

uncharacterized LOC107925870

cAMP-regulated phosphoprotein 21

uncharacterized LOC121209482

uncharacterized LOC102619616

uncharacterized LOC102629684

R3H domain-containing protein 2

R3H domain-containing protein 1

uncharacterized LOC100255059

uncharacterized LOC100251643

uncharacterized LOC7486913

uncharacterized LOC7479653

uncharacterized LOC7464072

R3H domain-containing protein 2

uncharacterized LOC11422184

cAMP-regulated phosphoprotein 21

uncharacterized LOC101245604

uncharacterized LOC101264077

R3H domain-containing protein 2

uncharacterized LOC102599801

R3H domain-containing protein 2-like

uncharacterized LOC107760960

uncharacterized LOC107805498

uncharacterized LOC107817225

uncharacterized LOC4347892

uncharacterized LOC4338782

R3H domain-containing protein 1

Single-stranded nucleic acid binding R3H protein

nucleic acid binding protein

60S ribosomal protein L10a

R3H domain-containing protein 2

uncharacterized LOC123182011

uncharacterized LOC123442546

R3H domain-containing protein 2-like

R3H domain-containing protein 1-like

uncharacterized LOC110430213

uncharacterized LOC100835943

R3H domain-containing protein 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03420	Nucleotide excision repair	2
cit04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi03013	Nucleocytoplasmic transport	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	5
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot04141	Protein processing in endoplasmic reticulum	3
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6
sot04141	Protein processing in endoplasmic reticulum	3
sot03013	Nucleocytoplasmic transport	2
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	3
nta04712	Circadian rhythm - plant	2
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2
nta04141	Protein processing in endoplasmic reticulum	2
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa04144	Endocytosis	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma04712	Circadian rhythm - plant	2
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma04141	Protein processing in endoplasmic reticulum	3
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	3
tae00330	Arginine and proline metabolism	3
tae00410	beta-Alanine metabolism	3
tae00770	Pantothenate and CoA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	3
hvu04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

824835

818696

820246

103847318

103859362

103863092

106434592

106353030

106381175

107925870

107915691

121209482

102619616

102629684

100791122

100796710

100797761

100255059

100251643

7486913

7479653

7464072

11415193

11422184

11422947

101245604

101264077

102580050

102599801

102600752

107760960

107805498

107817225

4347892

4338782

103632455

103647263

100282422

123095587

123090525

123182011

123442546

123446856

110433016

110430213

100835943

100822579

5725757

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	3	3	3	2	3	2	3	3	2	3	3	2	3	3	1	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G56680 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G56680 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**