ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100791122	R3H domain-containing protein 2
gma-r.7	100791122	R3H domain-containing protein 2
gma-m.5	100791122	R3H domain-containing protein 2
gma-u.5	100814835	R3H and SUZ domain-containing protein
gma-u.5	100799336	uncharacterized LOC100799336
gma-u.5	100796710	R3H domain-containing protein 2
mtr-u.5	11422947	cAMP-regulated phosphoprotein 21
mtr-u.5	11415193	R3H domain-containing protein 2
mtr-u.5	11422184	uncharacterized LOC11422184
ppo-u.5	7479653	uncharacterized LOC7479653
ppo-u.5	7464072	uncharacterized LOC7464072
ppo-u.5	7486913	uncharacterized LOC7486913
ath-u.5	AT2G40960	Single-stranded nucleic acid binding R3H protein
ath-u.5	AT3G10770	Single-stranded nucleic acid binding R3H protein
ath-u.5	AT3G56680	Single-stranded nucleic acid binding R3H protein
bra-r.6	103855609	uncharacterized LOC103855609
bra-r.6	103859362	uncharacterized LOC103859362
bra-r.6	103863092	protein encore
vvi-u.5	100255059	uncharacterized LOC100255059
vvi-u.5	100251643	uncharacterized LOC100251643
ghi-r.1	107915691	cAMP-regulated phosphoprotein 21
ghi-r.1	107925870	uncharacterized LOC107925870
ghi-r.1	121209482	uncharacterized LOC121209482
bna-r.1	111204517	uncharacterized LOC111204517
bna-r.1	111214992	protein encore
bna-r.1	BNAC05G42300D	uncharacterized BNAC05G42300D
cit-r.1	102629684	uncharacterized LOC102629684
cit-r.1	102619616	uncharacterized LOC102619616
sly-u.5	101264077	uncharacterized LOC101264077
sly-u.5	101245604	uncharacterized LOC101245604
sot-r.1	102599801	uncharacterized LOC102599801
sot-r.1	102580050	R3H domain-containing protein 2
sot-r.1	102600752	R3H domain-containing protein 2-like
nta-r.1	107817225	uncharacterized LOC107817225
nta-r.1	107808326	uncharacterized LOC107808326
nta-r.1	107805498	uncharacterized LOC107805498
osa-u.5	4347892	uncharacterized LOC4347892
osa-u.5	4338782	uncharacterized LOC4338782
zma-u.5	100282422	nucleic acid binding protein
zma-u.5	103627088	R3H domain-containing protein 1-like
zma-u.5	103632455	R3H domain-containing protein 1
tae-r.2	123182011	uncharacterized LOC123182011
tae-r.2	123132640	uncharacterized LOC123132640
tae-r.2	123090525	R3H domain-containing protein 2
hvu-r.1	123442546	uncharacterized LOC123442546
hvu-r.1	123446856	R3H domain-containing protein 2-like
sbi-r.1	110433016	R3H domain-containing protein 1-like
sbi-r.1	110430213	uncharacterized LOC110430213
bdi-r.1	100835943	uncharacterized LOC100835943
bdi-r.1	100822579	R3H domain-containing protein 2
cre-r.1	CHLRE_01g068742v5	uncharacterized protein

Top 50 coexpressed genes to 100791122 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100791122 (gma-u.5 coexpression data)

CoexMap"100791122"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003676 [list] [network] nucleic acid binding

(6221 genes)

IEA

Protein

XP_003556269.1 [sequence] [blastp]
XP_006606278.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, chlo 1, vacu 1	(predict for XP_003556269.1)
nucl 9, chlo 1, vacu 1	(predict for XP_006606278.1)

Subcellular
localization
TargetP

other 9	(predict for XP_003556269.1)
other 9	(predict for XP_006606278.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100791122	gma-r.7 for 100791122	gma-m.5 for 100791122	gma-u.5 for 100814835	gma-u.5 for 100799336	gma-u.5 for 100796710	mtr-u.5 for 11422947	mtr-u.5 for 11415193	mtr-u.5 for 11422184	ppo-u.5 for 7479653	ppo-u.5 for 7464072	ppo-u.5 for 7486913	ath-u.5 for AT2G40960	ath-u.5 for AT3G10770	ath-u.5 for AT3G56680	bra-r.6 for 103855609	bra-r.6 for 103859362	bra-r.6 for 103863092	vvi-u.5 for 100255059	vvi-u.5 for 100251643	ghi-r.1 for 107915691	ghi-r.1 for 107925870	ghi-r.1 for 121209482	bna-r.1 for 111204517	bna-r.1 for 111214992	bna-r.1 for BNAC05G42300D	cit-r.1 for 102629684	cit-r.1 for 102619616	sly-u.5 for 101264077	sly-u.5 for 101245604	sot-r.1 for 102599801	sot-r.1 for 102580050	sot-r.1 for 102600752	nta-r.1 for 107817225	nta-r.1 for 107808326	nta-r.1 for 107805498	osa-u.5 for 4347892	osa-u.5 for 4338782	zma-u.5 for 100282422	zma-u.5 for 103627088	zma-u.5 for 103632455	tae-r.2 for 123182011	tae-r.2 for 123132640	tae-r.2 for 123090525	hvu-r.1 for 123442546	hvu-r.1 for 123446856	sbi-r.1 for 110433016	sbi-r.1 for 110430213	bdi-r.1 for 100835943	bdi-r.1 for 100822579	cre-r.1 for CHLRE_01g068742v5

Ortholog

Ortholog ID: 1846

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

R3H domain-containing protein 2

R3H domain-containing protein 1

cAMP-regulated phosphoprotein 21

R3H domain-containing protein 2

uncharacterized LOC11422184

uncharacterized LOC7479653

uncharacterized LOC7464072

uncharacterized LOC7486913

Single-stranded nucleic acid binding R3H protein

uncharacterized LOC103859362

protein encore

uncharacterized LOC103847318

uncharacterized LOC100255059

uncharacterized LOC100251643

cAMP-regulated phosphoprotein 21

uncharacterized LOC107925870

uncharacterized LOC121209482

uncharacterized LOC106353030

R3H domain-containing protein 1-like

uncharacterized LOC106434592

uncharacterized LOC102629684

uncharacterized LOC102619616

uncharacterized LOC101264077

uncharacterized LOC101245604

uncharacterized LOC102599801

R3H domain-containing protein 2

R3H domain-containing protein 2-like

uncharacterized LOC107817225

uncharacterized LOC107805498

uncharacterized LOC107760960

uncharacterized LOC4347892

uncharacterized LOC4338782

nucleic acid binding protein

R3H domain-containing protein 1

Single-stranded nucleic acid binding R3H protein

uncharacterized LOC123182011

R3H domain-containing protein 2

60S ribosomal protein L10a

uncharacterized LOC123442546

R3H domain-containing protein 2-like

R3H domain-containing protein 1-like

uncharacterized LOC110430213

uncharacterized LOC100835943

R3H domain-containing protein 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi03013	Nucleocytoplasmic transport	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03420	Nucleotide excision repair	2
cit04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	5
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6
sot04141	Protein processing in endoplasmic reticulum	3
sot03013	Nucleocytoplasmic transport	2
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot04141	Protein processing in endoplasmic reticulum	3
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2
nta04141	Protein processing in endoplasmic reticulum	2
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	3
nta04712	Circadian rhythm - plant	2
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa04144	Endocytosis	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma04141	Protein processing in endoplasmic reticulum	3
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma04712	Circadian rhythm - plant	2
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	3
tae00330	Arginine and proline metabolism	3
tae00410	beta-Alanine metabolism	3
tae00770	Pantothenate and CoA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	3
hvu04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

100791122

100796710

100797761

11422947

11415193

11422184

7479653

7464072

7486913

818696

820246

824835

103859362

103863092

103847318

100255059

100251643

107915691

107925870

121209482

106353030

106381175

106434592

102629684

102619616

101264077

101245604

102599801

102580050

102600752

107817225

107805498

107760960

4347892

4338782

100282422

103632455

103647263

123182011

123090525

123095587

123442546

123446856

110433016

110430213

100835943

100822579

5725757

The preparation time of this page was 0.1 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	3	3	3	3	2	3	3	2	2	3	3	2	3	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100791122 (gma-u.5 coexpression data)

Top 50 enrichment test to 100791122 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**