ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
hvu-r.1	123446856	R3H domain-containing protein 2-like
hvu-r.1	123442546	uncharacterized LOC123442546
tae-r.2	123055602	uncharacterized LOC123055602
tae-r.2	123090525	R3H domain-containing protein 2
tae-r.2	123132640	uncharacterized LOC123132640
bdi-r.1	100835943	uncharacterized LOC100835943
bdi-r.1	100822579	R3H domain-containing protein 2
osa-u.5	4347892	uncharacterized LOC4347892
osa-u.5	4338782	uncharacterized LOC4338782
zma-u.5	100282422	nucleic acid binding protein
zma-u.5	103627088	R3H domain-containing protein 1-like
zma-u.5	103647263	Single-stranded nucleic acid binding R3H protein
sbi-r.1	110430213	uncharacterized LOC110430213
sbi-r.1	110433016	R3H domain-containing protein 1-like
ath-u.5	AT2G40960	Single-stranded nucleic acid binding R3H protein
ath-u.5	AT3G10770	Single-stranded nucleic acid binding R3H protein
ath-u.5	AT3G56680	Single-stranded nucleic acid binding R3H protein
gma-u.5	100814835	R3H and SUZ domain-containing protein
gma-u.5	100799336	uncharacterized LOC100799336
gma-u.5	100796710	R3H domain-containing protein 2
sly-u.5	101245604	uncharacterized LOC101245604
sly-u.5	101264077	uncharacterized LOC101264077
bra-r.6	103855609	uncharacterized LOC103855609
bra-r.6	103859362	uncharacterized LOC103859362
bra-r.6	103863092	protein encore
vvi-u.5	100255059	uncharacterized LOC100255059
vvi-u.5	100251643	uncharacterized LOC100251643
ppo-u.5	7479653	uncharacterized LOC7479653
ppo-u.5	7464072	uncharacterized LOC7464072
ppo-u.5	7486913	uncharacterized LOC7486913
mtr-u.5	11422947	cAMP-regulated phosphoprotein 21
mtr-u.5	11415193	R3H domain-containing protein 2
mtr-u.5	11422184	uncharacterized LOC11422184
ghi-r.1	121209482	uncharacterized LOC121209482
ghi-r.1	107925870	uncharacterized LOC107925870
ghi-r.1	107915691	cAMP-regulated phosphoprotein 21
bna-r.1	106381175	R3H domain-containing protein 1-like
bna-r.1	111214992	protein encore
bna-r.1	BNAC05G42300D	uncharacterized BNAC05G42300D
sot-r.1	102580050	R3H domain-containing protein 2
sot-r.1	102599801	uncharacterized LOC102599801
sot-r.1	102600752	R3H domain-containing protein 2-like
cit-r.1	102619616	uncharacterized LOC102619616
cit-r.1	102629684	uncharacterized LOC102629684
nta-r.1	107760960	uncharacterized LOC107760960
nta-r.1	107805498	uncharacterized LOC107805498
nta-r.1	107808326	uncharacterized LOC107808326
cre-r.1	CHLRE_01g068742v5	uncharacterized protein

Top 50 coexpressed genes to 123446856 (hvu-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123446856 (hvu-r.1 coexpression data)

CoexMap"123446856"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003676 [list] [network] nucleic acid binding

(3739 genes)

IEA

Protein

XP_044979330.1 [sequence] [blastp]
XP_044979331.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_044979330.1)
nucl 10	(predict for XP_044979331.1)

Subcellular
localization
TargetP

chlo 5, other 3	(predict for XP_044979330.1)
chlo 5, other 3	(predict for XP_044979331.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	hvu-r.1 for 123446856	hvu-r.1 for 123442546	tae-r.2 for 123055602	tae-r.2 for 123090525	tae-r.2 for 123132640	bdi-r.1 for 100835943	bdi-r.1 for 100822579	osa-u.5 for 4347892	osa-u.5 for 4338782	zma-u.5 for 100282422	zma-u.5 for 103627088	zma-u.5 for 103647263	sbi-r.1 for 110430213	sbi-r.1 for 110433016	ath-u.5 for AT2G40960	ath-u.5 for AT3G10770	ath-u.5 for AT3G56680	gma-u.5 for 100814835	gma-u.5 for 100799336	gma-u.5 for 100796710	sly-u.5 for 101245604	sly-u.5 for 101264077	bra-r.6 for 103855609	bra-r.6 for 103859362	bra-r.6 for 103863092	vvi-u.5 for 100255059	vvi-u.5 for 100251643	ppo-u.5 for 7479653	ppo-u.5 for 7464072	ppo-u.5 for 7486913	mtr-u.5 for 11422947	mtr-u.5 for 11415193	mtr-u.5 for 11422184	ghi-r.1 for 121209482	ghi-r.1 for 107925870	ghi-r.1 for 107915691	bna-r.1 for 106381175	bna-r.1 for 111214992	bna-r.1 for BNAC05G42300D	sot-r.1 for 102580050	sot-r.1 for 102599801	sot-r.1 for 102600752	cit-r.1 for 102619616	cit-r.1 for 102629684	nta-r.1 for 107760960	nta-r.1 for 107805498	nta-r.1 for 107808326	cre-r.1 for CHLRE_01g068742v5

Ortholog

Ortholog ID: 1846

Species

hvu

tae

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

R3H domain-containing protein 2-like

uncharacterized LOC123442546

R3H domain-containing protein 2

uncharacterized LOC123182011

60S ribosomal protein L10a

uncharacterized LOC100835943

R3H domain-containing protein 2

uncharacterized LOC4347892

uncharacterized LOC4338782

nucleic acid binding protein

Single-stranded nucleic acid binding R3H protein

R3H domain-containing protein 1

uncharacterized LOC110430213

R3H domain-containing protein 1-like

Single-stranded nucleic acid binding R3H protein

R3H domain-containing protein 2

R3H domain-containing protein 1

uncharacterized LOC101245604

uncharacterized LOC101264077

uncharacterized LOC103859362

protein encore

uncharacterized LOC103847318

uncharacterized LOC100255059

uncharacterized LOC100251643

uncharacterized LOC7479653

uncharacterized LOC7464072

uncharacterized LOC7486913

cAMP-regulated phosphoprotein 21

R3H domain-containing protein 2

uncharacterized LOC11422184

uncharacterized LOC121209482

uncharacterized LOC107925870

cAMP-regulated phosphoprotein 21

R3H domain-containing protein 1-like

uncharacterized LOC106353030

uncharacterized LOC106434592

R3H domain-containing protein 2

uncharacterized LOC102599801

R3H domain-containing protein 2-like

uncharacterized LOC102619616

uncharacterized LOC102629684

uncharacterized LOC107760960

uncharacterized LOC107805498

uncharacterized LOC107817225

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	3
hvu04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	3
tae00330	Arginine and proline metabolism	3
tae00410	beta-Alanine metabolism	3
tae00770	Pantothenate and CoA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa04144	Endocytosis	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma04141	Protein processing in endoplasmic reticulum	3
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma04712	Circadian rhythm - plant	2
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	5
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi03013	Nucleocytoplasmic transport	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot04141	Protein processing in endoplasmic reticulum	3
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6
sot04141	Protein processing in endoplasmic reticulum	3
sot03013	Nucleocytoplasmic transport	2
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03420	Nucleotide excision repair	2
cit04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	3
nta04712	Circadian rhythm - plant	2
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2
nta04141	Protein processing in endoplasmic reticulum	2
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2

Expression

Expression pattern

Entrez Gene ID^*

123446856

123442546

123090525

123182011

123095587

100835943

100822579

4347892

4338782

100282422

103647263

103632455

110430213

110433016

818696

820246

824835

100796710

100791122

100797761

101245604

101264077

103859362

103863092

103847318

100255059

100251643

7479653

7464072

7486913

11422947

11415193

11422184

121209482

107925870

107915691

106381175

106353030

106434592

102580050

102599801

102600752

102619616

102629684

107760960

107805498

107817225

5725757

The preparation time of this page was 0.1 [sec].


Species	hvu	tae	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	2	2	3	2	3	3	2	3	2	3	3	3	3	3	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123446856 (hvu-r.1 coexpression data)

Top 50 enrichment test to 123446856 (hvu-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**