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Orthologous genes in OrthoFinder**

Species Gene Description
 hvu-r.1   123412545   tryptophan synthase beta chain 2 
 tae-r.2   123164477   tryptophan synthase beta chain 2 
 tae-r.2   123159835   tryptophan synthase beta chain 2 
 tae-r.2   123148347   tryptophan synthase beta chain 2 
 bdi-r.1   100844752   tryptophan synthase beta chain 2 
 osa-u.5   4341584   uncharacterized LOC4341584 
 zma-u.5   109623449   uncharacterized LOC109623449 
 sbi-r.1   8067674   tryptophan synthase beta chain 2 
 ath-u.5   TSBtype2   tryptophan synthase beta type 2 
 gma-u.5   100802258   tryptophan synthase beta chain 2 
 sly-u.5   101261400   uncharacterized LOC101261400 
 bra-r.6   103863791   tryptophan synthase beta chain 2 
 bra-r.6   103850119   tryptophan synthase beta chain 2 
 bra-r.6   103864163   tryptophan synthase beta chain 2 
 vvi-u.5   100261704   uncharacterized LOC100261704 
 ppo-u.5   18107426   uncharacterized LOC18107426 
 mtr-u.5   25495527   tryptophan synthase beta chain 2 
 ghi-r.1   107912895   tryptophan synthase beta chain 2 
 ghi-r.1   107895427   tryptophan synthase beta chain 2 
 bna-r.1   106445895   tryptophan synthase beta chain 2 
 bna-r.1   106436375   tryptophan synthase beta chain 2 
 bna-r.1   106407385   tryptophan synthase beta chain 2 
 sot-r.1   102588644   tryptophan synthase beta chain 2 
 cit-r.1   102629591   uncharacterized LOC102629591 
 nta-r.1   107789189   uncharacterized LOC107789189 
 nta-r.1   107827342   uncharacterized LOC107827342 

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Top 50 coexpressed genes to 123412545 (hvu-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123412545 (hvu-r.1 coexpression data)

CoexMap"123412545"


hvuLOC123412545 | Entrez gene ID : 123412545    
Species hvu tae bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 3 1 1 1 1 1 1 1 3 1 1 1 2 3 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG hvg00260 [list] [network] Glycine, serine and threonine metabolism (65 genes)
hvg00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (44 genes)
hvg01230 [list] [network] Biosynthesis of amino acids (224 genes)
GO BP
GO:0000162 [list] [network] L-tryptophan biosynthetic process  (20 genes)  IEA  
GO CC
GO MF
GO:0052684 [list] [network] L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity  (1 genes)  IEA  
GO:0004834 [list] [network] tryptophan synthase activity  (7 genes)  IEA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (101 genes)  IEA  
Protein XP_044961427.1 [sequence] [blastp]
XP_044961428.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 4  (predict for XP_044961427.1)
chlo 6,  mito 4  (predict for XP_044961428.1)
Subcellular
localization
TargetP
chlo 7,  mito 3  (predict for XP_044961427.1)
chlo 7,  mito 4  (predict for XP_044961428.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

hvu-r.1
for
123412545
tae-r.2
for
123164477
tae-r.2
for
123159835
tae-r.2
for
123148347
bdi-r.1
for
100844752
osa-u.5
for
4341584
zma-u.5
for
109623449
sbi-r.1
for
8067674
ath-u.5
for
TSBtype2
gma-u.5
for
100802258
sly-u.5
for
101261400
bra-r.6
for
103863791
bra-r.6
for
103850119
bra-r.6
for
103864163
vvi-u.5
for
100261704
ppo-u.5
for
18107426
mtr-u.5
for
25495527
ghi-r.1
for
107912895
ghi-r.1
for
107895427
bna-r.1
for
106445895
bna-r.1
for
106436375
bna-r.1
for
106407385
sot-r.1
for
102588644
cit-r.1
for
102629591
nta-r.1
for
107789189
nta-r.1
for
107827342


Ortholog ID: 8171
Species hvu tae tae tae bdi osa zma sbi ath gma sly bra bra bra vvi ppo mtr ghi ghi bna bna bna sot cit nta nta
Symbol LOC123412545 LOC123164477 LOC123159835 LOC123148347 LOC100844752 LOC4341584 LOC109623449 LOC8067674 TSBtype2 LOC100802258 LOC101261400 LOC103863791 LOC103850119 LOC103864163 LOC100261704 LOC18107426 LOC25495527 LOC107912895 LOC107895427 LOC106436375 LOC106376988 LOC106376499 LOC102588644 LOC102629591 LOC107789189 LOC107827342
Function* tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 uncharacterized LOC4341584 uncharacterized LOC109623449 tryptophan synthase beta chain 2 tryptophan synthase beta type 2 tryptophan synthase beta chain 2 uncharacterized LOC101261400 tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 uncharacterized LOC100261704 uncharacterized LOC18107426 tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 tryptophan synthase beta chain 2-like tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 uncharacterized LOC102629591 uncharacterized LOC107789189 uncharacterized LOC107827342
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 7
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
hvu00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00260 Glycine, serine and threonine metabolism 5
tae01230 Biosynthesis of amino acids 5
tae04146 Peroxisome 3
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00520 Amino sugar and nucleotide sugar metabolism 6
tae04016 MAPK signaling pathway - plant 6
tae04146 Peroxisome 3
tae00260 Glycine, serine and threonine metabolism 3
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04146 Peroxisome 3
tae00260 Glycine, serine and threonine metabolism 3
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae01230 Biosynthesis of amino acids 3
tae00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 8
osa00250 Alanine, aspartate and glutamate metabolism 3
osa00340 Histidine metabolism 2
osa00220 Arginine biosynthesis 2
osa00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00062 Fatty acid elongation 3
zma04626 Plant-pathogen interaction 3
zma02010 ABC transporters 2
zma04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 2
ath00260 Glycine, serine and threonine metabolism 2
ath00071 Fatty acid degradation 2
ath04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 9
gma03020 RNA polymerase 2
gma04626 Plant-pathogen interaction 2
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 10
sly01200 Carbon metabolism 5
sly00020 Citrate cycle (TCA cycle) 4
sly01230 Biosynthesis of amino acids 4
sly04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 4
mtr01200 Carbon metabolism 3
mtr01240 Biosynthesis of cofactors 2
mtr00010 Glycolysis / Gluconeogenesis 2
mtr00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
ghi04626 Plant-pathogen interaction 6
ghi00260 Glycine, serine and threonine metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
ghi04626 Plant-pathogen interaction 6
ghi00260 Glycine, serine and threonine metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 6
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 6
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 6
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 4
sot00100 Steroid biosynthesis 3
sot00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 4
nta00260 Glycine, serine and threonine metabolism 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00061 Fatty acid biosynthesis 3
nta00260 Glycine, serine and threonine metabolism 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta00010 Glycolysis / Gluconeogenesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123412545 123164477 123159835 123148347 100844752 4341584 109623449 8067674 833841 100802258 101261400 103863791 103850119 103864163 100261704 18107426 25495527 107912895 107895427 106436375 106376988 106376499 102588644 102629591 107789189 107827342
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