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Orthologous genes in OrthoFinder**

Species Gene Description
 hvu-r.1   123420003   photosystem II D2 protein 
 osa-u.5   psbD   photosystem II protein D2 
 zma-u.5   118475437   photosystem II D2 protein 
 zma-u.5   psbD   photosystem II protein D2 
 zma-u.5   118475934   photosystem II D2 protein 
 ath-u.5   psbD   photosystem II protein D2 
 gma-u.5   psbD   photosystem II protein D2 
 sly-u.5   psbD   photosystem II protein D2 
 vvi-u.5   psbD   photosystem II protein D2 
 ppo-u.5   psbD   photosystem II protein D2 
 mtr-u.5   psbD   photosystem II protein D2 

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Top 50 coexpressed genes to 123420003 (hvu-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123420003 (hvu-r.1 coexpression data)

CoexMap"123420003"


hvuLOC123420003 | Entrez gene ID : 123420003    
Species hvu osa zma ath gma sly vvi ppo mtr sbi nta bra cre cit bdi sot tae bna ghi
Paralog 1 1 3 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG hvg00195 [list] [network] Photosynthesis (289 genes)
GO BP
GO:0009772 [list] [network] photosynthetic electron transport in photosystem II  (60 genes)  IEA  
GO:0019684 [list] [network] photosynthesis, light reaction  (115 genes)  IEA  
GO:0015979 [list] [network] photosynthesis  (204 genes)  IEA  
GO CC
GO:0009523 [list] [network] photosystem II  (85 genes)  IEA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (185 genes)  IEA  
GO MF
Protein XP_044963188.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  plas 3,  cyto_plas 3,  pero 2  (predict for XP_044963188.1)
Subcellular
localization
TargetP
other 9  (predict for XP_044963188.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

hvu-r.1
for
123420003

.
osa-u.5
for
psbD

.
zma-u.5
for
118475437

.
zma-u.5
for
psbD

.
zma-u.5
for
118475934

.
ath-u.5
for
psbD

.
gma-u.5
for
psbD

.
sly-u.5
for
psbD

.
vvi-u.5
for
psbD

.
ppo-u.5
for
psbD

.
mtr-u.5
for
psbD

.


Ortholog ID: 1774
Species ath gma sly osa zma zma bra vvi ppo mtr tae tae hvu hvu ghi ghi bna sbi sot cit bdi nta
Symbol psbD psbD psbD psbD psbD LOC118475934 LOC117126101 psbD psbD psbD LOC123051035 LOC123056199 LOC123418889 LOC123419405 LOC121213538 psbD psbD psbD psbD psbD psbD psbD
Function* photosystem II protein D2 photosystem II protein D2 photosystem II protein D2 photosystem II protein D2 photosystem II protein D2 photosystem II D2 protein photosystem II D2 protein photosystem II protein D2 photosystem II protein D2 photosystem II protein D2 photosystem II D2 protein-like photosystem II D2 protein photosystem II D2 protein photosystem II D2 protein photosystem II D2 protein photosystem II protein D2 photosystem II protein D2 photosystem II protein D2 photosystem II protein D2 photosystem II protein D2 photosystem II protein D2 photosystem II protein D2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 15
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 15
gma00190 Oxidative phosphorylation 4
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 13
sly00970 Aminoacyl-tRNA biosynthesis 2
sly00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 13
osa03010 Ribosome 5
osa00190 Oxidative phosphorylation 4
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 15
zma03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 14
zma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 12
vvi03010 Ribosome 2
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 14
ppo00190 Oxidative phosphorylation 4
ppo00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 7
mtr03010 Ribosome 5
mtr00190 Oxidative phosphorylation 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 11
tae00190 Oxidative phosphorylation 2
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 8
sbi03010 Ribosome 8
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 12
sot00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 9
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 6
bdi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 12
nta00190 Oxidative phosphorylation 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844775 3989284 3950483 3131412 845202 118475934 117126101 4025083 4929654 5333170 123051035 123056199 123418889 123419405 121213538 3989205 11542039 4549103 4099961 4271200 6439844 800525
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