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Orthologous genes in OrthoFinder**

Species Gene Description
 hvu-r.1   123430509   pre-mRNA-processing factor 19 
 hvu-r.1   123449851   pre-mRNA-processing factor 19-like 
 tae-r.2   123093729   pre-mRNA-processing factor 19 
 tae-r.2   123120295   pre-mRNA-processing factor 19 
 tae-r.2   123098972   pre-mRNA-processing factor 19 
 bdi-r.1   100837922   pre-mRNA-processing factor 19 
 bdi-r.1   100829617   pre-mRNA-processing factor 19 
 osa-u.5   4348844   pre-mRNA-processing factor 19-like 
 zma-u.5   100191855   uncharacterized LOC100191855 
 zma-u.5   100284255   pre-mRNA-splicing factor 19 
 sbi-r.1   8059260   pre-mRNA-processing factor 19 
 ath-u.5   MAC3B   MOS4-associated complex 3B 
 ath-u.5   MAC3A   MOS4-associated complex 3A 
 gma-u.5   100800213   pre-mRNA-processing factor 19 
 gma-u.5   100527039   pre-mRNA-processing factor 19 homolog 2 
 sly-u.5   101263464   pre-mRNA-processing factor 19 
 bra-r.6   103844248   pre-mRNA-processing factor 19 homolog 1 
 bra-r.6   103865262   pre-mRNA-processing factor 19 homolog 2 
 vvi-u.5   100249408   pre-mRNA-processing factor 19 
 ppo-u.5   7459990   pre-mRNA-processing factor 19 homolog 2 
 ppo-u.5   7480889   pre-mRNA-processing factor 19 homolog 2 
 mtr-u.5   11431087   pre-mRNA-processing factor 19 
 ghi-r.1   107930406   pre-mRNA-processing factor 19 homolog 1 
 ghi-r.1   107940133   pre-mRNA-processing factor 19 
 ghi-r.1   107936145   pre-mRNA-processing factor 19 homolog 1 
 bna-r.1   106447146   pre-mRNA-processing factor 19 homolog 2-like 
 bna-r.1   106367476   pre-mRNA-processing factor 19 homolog 2 
 bna-r.1   111200417   pre-mRNA-processing factor 19 homolog 1 
 sot-r.1   102592190   pre-mRNA-processing factor 19 homolog 1-like 
 sot-r.1   102600710   pre-mRNA-processing factor 19 
 cit-r.1   102630495   pre-mRNA-processing factor 19 homolog 2 
 nta-r.1   107764234   pre-mRNA-processing factor 19 
 nta-r.1   107769884   pre-mRNA-processing factor 19 homolog 1 
 nta-r.1   107775142   pre-mRNA-processing factor 19 homolog 1-like 
 cre-r.1   CHLRE_02g073650v5   uncharacterized protein 

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Top 50 coexpressed genes to 123430509 (hvu-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123430509 (hvu-r.1 coexpression data)

CoexMap"123430509"


hvuLOC123430509 | Entrez gene ID : 123430509    
Species hvu tae bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 3 2 1 2 1 2 2 1 2 1 2 1 3 3 2 1 3 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG hvg03040 [list] [network] Spliceosome (365 genes)
hvg04120 [list] [network] Ubiquitin mediated proteolysis (227 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (187 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (296 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (478 genes)  IEA  
GO CC
GO:0071006 [list] [network] U2-type catalytic step 1 spliceosome  (5 genes)  IEA  
GO:0000974 [list] [network] Prp19 complex  (18 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5514 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (217 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4692 genes)  IEA  
Protein XP_044970314.1 [sequence] [blastp]
XP_044970319.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  vacu 1,  pero 1  (predict for XP_044970314.1)
cyto 6,  nucl 2,  chlo 1,  pero 1,  cysk 1  (predict for XP_044970319.1)
Subcellular
localization
TargetP
scret 7  (predict for XP_044970314.1)
other 8  (predict for XP_044970319.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

hvu-r.1
for
123430509
hvu-r.1
for
123449851
tae-r.2
for
123093729
tae-r.2
for
123120295
tae-r.2
for
123098972
bdi-r.1
for
100837922
bdi-r.1
for
100829617
osa-u.5
for
4348844
zma-u.5
for
100191855
zma-u.5
for
100284255
sbi-r.1
for
8059260
ath-u.5
for
MAC3B
ath-u.5
for
MAC3A
gma-u.5
for
100800213
gma-u.5
for
100527039
sly-u.5
for
101263464
bra-r.6
for
103844248
bra-r.6
for
103865262
vvi-u.5
for
100249408
ppo-u.5
for
7459990
ppo-u.5
for
7480889
mtr-u.5
for
11431087
ghi-r.1
for
107930406
ghi-r.1
for
107940133
ghi-r.1
for
107936145
bna-r.1
for
106447146
bna-r.1
for
106367476
bna-r.1
for
111200417
sot-r.1
for
102592190
sot-r.1
for
102600710
cit-r.1
for
102630495
nta-r.1
for
107764234
nta-r.1
for
107769884
nta-r.1
for
107775142
cre-r.1
for
CHLRE_02g073650v5


Ortholog ID: 4050
Species hvu hvu tae tae tae bdi bdi osa zma zma sbi ath ath gma gma sly bra bra vvi ppo ppo mtr ghi ghi ghi bna bna bna sot sot cit nta nta nta cre
Symbol LOC123430509 LOC123449851 LOC123120295 LOC123098972 LOC123044996 LOC100837922 LOC100829617 LOC4348844 LOC100191855 LOC100284255 LOC8059260 MAC3B MAC3A LOC100800213 LOC100527039 LOC101263464 LOC103844248 LOC103865262 LOC100249408 LOC7459990 LOC7480889 LOC11431087 LOC107930406 LOC107940133 LOC107932162 LOC106447146 LOC111200417 LOC106375860 LOC102592190 LOC102600710 LOC102630495 LOC107764234 LOC107769884 LOC107775142 CHLRE_02g073650v5
Function* pre-mRNA-processing factor 19 pre-mRNA-processing factor 19-like pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19-like uncharacterized LOC100191855 pre-mRNA-splicing factor 19 pre-mRNA-processing factor 19 MOS4-associated complex 3B MOS4-associated complex 3A pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 homolog 2 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 homolog 1 pre-mRNA-processing factor 19 homolog 2 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 homolog 2 pre-mRNA-processing factor 19 homolog 2 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 homolog 1 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 homolog 2-like pre-mRNA-processing factor 19 homolog 1 pre-mRNA-processing factor 19 homolog 2 pre-mRNA-processing factor 19 homolog 1-like pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 homolog 2 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 homolog 1 pre-mRNA-processing factor 19 homolog 1-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 6
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03040 Spliceosome 3
tae04120 Ubiquitin mediated proteolysis 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae04120 Ubiquitin mediated proteolysis 3
tae03013 Nucleocytoplasmic transport 2
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 3
bdi03060 Protein export 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03015 mRNA surveillance pathway 6
bdi03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 5
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 6
zma03040 Spliceosome 3
zma03082 ATP-dependent chromatin remodeling 2
zma03083 Polycomb repressive complex 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03082 ATP-dependent chromatin remodeling 2
zma03013 Nucleocytoplasmic transport 2
zma04120 Ubiquitin mediated proteolysis 2
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03015 mRNA surveillance pathway 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03082 ATP-dependent chromatin remodeling 2
ath04144 Endocytosis 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 9
gma03040 Spliceosome 4
gma03008 Ribosome biogenesis in eukaryotes 3
gma03250 Viral life cycle - HIV-1 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03020 RNA polymerase 2
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo04120 Ubiquitin mediated proteolysis 2
ppo04075 Plant hormone signal transduction 2
ppo03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
ppo03040 Spliceosome 2
ppo00020 Citrate cycle (TCA cycle) 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 14
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 11
ghi03083 Polycomb repressive complex 8
ghi04141 Protein processing in endoplasmic reticulum 8
ghi03040 Spliceosome 3
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
ghi03013 Nucleocytoplasmic transport 6
ghi03015 mRNA surveillance pathway 6
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 10
ghi03013 Nucleocytoplasmic transport 8
ghi03015 mRNA surveillance pathway 8
ghi04120 Ubiquitin mediated proteolysis 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna03040 Spliceosome 4
bna04120 Ubiquitin mediated proteolysis 4
bna04122 Sulfur relay system 3
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna04120 Ubiquitin mediated proteolysis 3
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna03040 Spliceosome 4
bna04120 Ubiquitin mediated proteolysis 4
bna04122 Sulfur relay system 2
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03013 Nucleocytoplasmic transport 5
sot03015 mRNA surveillance pathway 5
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 3
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta04120 Ubiquitin mediated proteolysis 5
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta04120 Ubiquitin mediated proteolysis 4
nta03010 Ribosome 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 8
nta04120 Ubiquitin mediated proteolysis 4
nta03013 Nucleocytoplasmic transport 2
nta03010 Ribosome 2
nta03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 13
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123430509 123449851 123120295 123098972 123044996 100837922 100829617 4348844 100191855 100284255 8059260 817897 839503 100800213 100527039 101263464 103844248 103865262 100249408 7459990 7480889 11431087 107930406 107940133 107932162 106447146 111200417 106375860 102592190 102600710 102630495 107764234 107769884 107775142 5727163
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