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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125575053   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase-like 
 ath-u.5   AT1G36310   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 gma-u.5   100784028   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 gma-u.5   100807751   alkylated DNA repair protein alkB homolog 8-like 
 vvi-u.5   100262638   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 ppo-u.5   7495129   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 mtr-u.5   25488378   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 sly-u.5   101263510   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 osa-u.5   4330741   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 zma-u.5   103627749   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 

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Top 50 coexpressed genes to 125575053 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125575053 (bna-r.1 coexpression data)

CoexMap"125575053"


bnaLOC125575053 | Entrez gene ID : 125575053    
Species bna ath gma vvi ppo mtr sly osa zma hvu cit bra ghi sbi bdi nta tae cre sot
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0002098 [list] [network] tRNA wobble uridine modification  (45 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (16489 genes)  IEA  
GO MF
GO:0000049 [list] [network] tRNA binding  (83 genes)  IEA  
GO:0008757 [list] [network] S-adenosylmethionine-dependent methyltransferase activity  (525 genes)  IEA  
Protein XP_022556117.2 [sequence] [blastp]
XP_048609509.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 2,  nucl 1  (predict for XP_022556117.2)
cyto 6,  chlo 2,  nucl 1  (predict for XP_048609509.1)
Subcellular
localization
TargetP
other 8  (predict for XP_022556117.2)
other 8  (predict for XP_048609509.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125575053
ath-u.5
for
AT1G36310
gma-u.5
for
100784028
gma-u.5
for
100807751
vvi-u.5
for
100262638
ppo-u.5
for
7495129
mtr-u.5
for
25488378
sly-u.5
for
101263510
osa-u.5
for
4330741
zma-u.5
for
103627749


Ortholog ID: 8729
Species bna bna bra ath ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC106418960 LOC106411644 LOC103848760 AT1G36310 LOC107918198 LOC102625137 LOC100807751 LOC100784028 LOC100262638 LOC7495129 LOC25488378 LOC101263510 LOC102591578 LOC107777356 LOC107784057 LOC4330741 LOC103627749 LOC123128353 LOC123138210 LOC123403160 LOC8066423 LOC100827681
Function* tRNA (carboxymethyluridine(34)-5-O)-methyltransferase-like tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase S-adenosyl-L-methionine-dependent methyltransferases superfamily protein tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase alkylated DNA repair protein alkB homolog 8-like tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase alkylated DNA repair protein alkB homolog 8 tRNA (carboxymethyluridine(34)-5-O)-methyltransferase-like tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase alkylated DNA repair protein alkB homolog 8 tRNA (carboxymethyluridine(34)-5-O)-methyltransferase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
bna03410 Base excision repair 2
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00513 Various types of N-glycan biosynthesis 2
ghi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 4
sot04382 Cornified envelope formation 4
sot04136 Autophagy - other 3
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 3
nta00190 Oxidative phosphorylation 2
nta04142 Lysosome 2
nta04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 5
nta03040 Spliceosome 4
nta04141 Protein processing in endoplasmic reticulum 4
nta03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 3
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
sbi03040 Spliceosome 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106418960 106411644 103848760 840538 107918198 102625137 100807751 100784028 100262638 7495129 25488378 101263510 102591578 107777356 107784057 4330741 103627749 123128353 123138210 123403160 8066423 100827681
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