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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125577352   splicing factor 3B subunit 2-like 
 ath-u.5   AT4G21660   proline-rich spliceosome-associated (PSP) family protein 
 gma-u.5   100815606   splicing factor 3B subunit 2 
 gma-u.5   100810640   splicing factor 3B subunit 2 
 gma-u.5   100797656   splicing factor 3B subunit 2 
 vvi-u.5   100241488   uncharacterized LOC100241488 
 ppo-u.5   7490813   uncharacterized LOC7490813 
 ppo-u.5   7485563   uncharacterized LOC7485563 
 mtr-u.5   25493205   splicing factor 3B subunit 2 
 mtr-u.5   11446801   splicing factor 3B subunit 2 
 sly-u.5   101264481   uncharacterized LOC101264481 
 sly-u.5   101261586   uncharacterized LOC101261586 
 osa-u.5   4331222   uncharacterized LOC4331222 
 zma-u.5   100272396   uncharacterized LOC100272396 

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Top 50 coexpressed genes to 125577352 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125577352 (bna-r.1 coexpression data)

CoexMap"125577352"


bnaLOC125577352 | Entrez gene ID : 125577352    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 1 3 1 2 2 2 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (548 genes)  IEA  
GO CC
GO:0005689 [list] [network] U12-type spliceosomal complex  (61 genes)  IEA  
GO:0005686 [list] [network] U2 snRNP  (88 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (154 genes)  IEA  
GO:0005684 [list] [network] U2-type spliceosomal complex  (194 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (222 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
Protein XP_048594724.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_048594724.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_048594724.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125577352

.
ath-u.5
for
AT4G21660

.
gma-u.5
for
100815606

.
gma-u.5
for
100810640

.
gma-u.5
for
100797656

.
vvi-u.5
for
100241488

.
ppo-u.5
for
7490813

.
ppo-u.5
for
7485563

.
mtr-u.5
for
25493205

.
mtr-u.5
for
11446801

.
sly-u.5
for
101264481

.
sly-u.5
for
101261586

.
osa-u.5
for
4331222

.
zma-u.5
for
100272396

.


Ortholog ID: 6618
Species ath gma gma sly sly osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol AT4G21660 LOC100810640 LOC100797656 LOC101261586 LOC101264481 LOC4331222 LOC100272396 LOC103859260 LOC103834183 LOC100241488 LOC7485563 LOC7490813 LOC11446801 LOC25493205 LOC123146294 LOC123140034 LOC123401254 LOC107962985 LOC107901670 LOC106375720 LOC106446386 CHLRE_12g514450v5 LOC8069247 LOC102604583 LOC102603948 LOC102613606 LOC100838398 LOC107785564 LOC107808380
Function* proline-rich spliceosome-associated (PSP) family protein splicing factor 3B subunit 2 splicing factor 3B subunit 2 uncharacterized LOC101261586 uncharacterized LOC101264481 uncharacterized LOC4331222 uncharacterized LOC100272396 splicing factor 3B subunit 2 splicing factor 3B subunit 2 uncharacterized LOC100241488 uncharacterized LOC7485563 uncharacterized LOC7490813 splicing factor 3B subunit 2 splicing factor 3B subunit 2 splicing factor 3B subunit 2 splicing factor 3B subunit 2 splicing factor 3B subunit 2-like splicing factor 3B subunit 2 splicing factor 3B subunit 2 splicing factor 3B subunit 2-like splicing factor 3B subunit 2-like uncharacterized protein splicing factor 3B subunit 2 splicing factor 3B subunit 2-like splicing factor 3B subunit 2 uncharacterized LOC102613606 splicing factor 3B subunit 2 uncharacterized LOC107785564 uncharacterized LOC107808380
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
sly03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03008 Ribosome biogenesis in eukaryotes 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 4
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00330 Arginine and proline metabolism 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03040 Spliceosome 4
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta04141 Protein processing in endoplasmic reticulum 4
nta03250 Viral life cycle - HIV-1 2
nta04120 Ubiquitin mediated proteolysis 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03250 Viral life cycle - HIV-1 3
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828253 100810640 100797656 101261586 101264481 4331222 100272396 103859260 103834183 100241488 7485563 7490813 11446801 25493205 123146294 123140034 123401254 107962985 107901670 106375720 106446386 5728547 8069247 102604583 102603948 102613606 100838398 107785564 107808380
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