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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125585352   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 bna-r.1   111212717   cysteine--tRNA ligase 2, cytoplasmic 
 bna-r.1   106445932   cysteine--tRNA ligase 2, cytoplasmic-like 
 bna-r.1   106410917   cysteine--tRNA ligase 2, cytoplasmic 
 bra-r.6   103863802   cysteine--tRNA ligase 2, cytoplasmic 
 bra-r.6   103867896   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 bra-r.6   103850130   cysteine--tRNA ligase 2, cytoplasmic 
 ath-u.5   SYCO ARATH   Cysteinyl-tRNA synthetase, class Ia family protein 
 ath-u.5   AT3G56300   Cysteinyl-tRNA synthetase, class Ia family protein 
 ath-u.5   AT5G38830   Cysteinyl-tRNA synthetase, class Ia family protein 
 ghi-r.1   107894094   cysteine--tRNA ligase 2, cytoplasmic 
 ghi-r.1   107894671   cysteine--tRNA ligase 2, cytoplasmic 
 ghi-r.1   107933844   cysteine--tRNA ligase 2, cytoplasmic 
 cit-r.1   102624731   cysteine--tRNA ligase 2, cytoplasmic 
 cit-r.1   102608826   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 gma-u.5   100786700   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 gma-u.5   100777971   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 gma-u.5   100777447   cysteine--tRNA ligase 2, cytoplasmic 
 vvi-u.5   100854736   cysteine--tRNA ligase 2, cytoplasmic 
 vvi-u.5   100251639   cysteine--tRNA ligase 2, cytoplasmic 
 vvi-u.5   100245851   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 ppo-u.5   7475579   cysteine--tRNA ligase 2, cytoplasmic 
 ppo-u.5   7458385   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.5   11432999   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.5   11431016   cysteine--tRNA ligase 2, cytoplasmic 
 sly-u.5   101256769   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 sly-u.5   101251377   cysteine--tRNA ligase 2, cytoplasmic 
 sot-r.1   102581041   cysteine--tRNA ligase 2, cytoplasmic 
 sot-r.1   102604325   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 nta-r.1   107797495   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 nta-r.1   107766982   cysteine--tRNA ligase, chloroplastic/mitochondrial-like 
 nta-r.1   107796507   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 osa-u.5   4347821   cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial-like 
 osa-u.5   9270000   cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 
 zma-u.5   103644288   cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial-like 
 zma-u.5   100280495   uncharacterized LOC100280495 
 zma-u.5   100193566   Cysteine--tRNA ligase 1 cytoplasmic 
 tae-r.2   123122580   cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial 
 tae-r.2   123088115   cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 
 tae-r.2   123098747   cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 
 hvu-r.1   123451939   cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial 
 hvu-r.1   123449680   cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial-like 
 sbi-r.1   8077246   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 sbi-r.1   8085498   cysteine--tRNA ligase 2, cytoplasmic 
 sbi-r.1   110430328   cysteine--tRNA ligase, chloroplastic/mitochondrial-like 
 bdi-r.1   100837019   cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial 
 bdi-r.1   100834139   cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 
 cre-r.1   CHLRE_01g069472v5   uncharacterized protein 

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Top 50 coexpressed genes to 125585352 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125585352 (bna-r.1 coexpression data)

CoexMap"125585352"


bnaLOC125585352 | Entrez gene ID : 125585352    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 2 3 3 2 2 2 2 3 2 3 3 2 3 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna00970 [list] [network] Aminoacyl-tRNA biosynthesis (226 genes)
GO BP
GO:0006423 [list] [network] cysteinyl-tRNA aminoacylation  (11 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (16489 genes)  IEA  
GO MF
GO:0004817 [list] [network] cysteine-tRNA ligase activity  (11 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5995 genes)  IEA  
Protein XP_048610232.1 [sequence] [blastp]
XP_048610233.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 2  (predict for XP_048610232.1)
chlo 3,  mito 3,  pero 3,  chlo_mito 3  (predict for XP_048610233.1)
Subcellular
localization
TargetP
chlo 7,  mito 6  (predict for XP_048610232.1)
mito 7,  other 4  (predict for XP_048610233.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125585352
bna-r.1
for
111212717
bna-r.1
for
106445932
bna-r.1
for
106410917
bra-r.6
for
103863802
bra-r.6
for
103867896
bra-r.6
for
103850130
ath-u.5
for
SYCO ARATH
ath-u.5
for
AT3G56300
ath-u.5
for
AT5G38830
ghi-r.1
for
107894094
ghi-r.1
for
107894671
ghi-r.1
for
107933844
cit-r.1
for
102624731
cit-r.1
for
102608826
gma-u.5
for
100786700
gma-u.5
for
100777971
gma-u.5
for
100777447
vvi-u.5
for
100854736
vvi-u.5
for
100251639
vvi-u.5
for
100245851
ppo-u.5
for
7475579
ppo-u.5
for
7458385
mtr-u.5
for
11432999
mtr-u.5
for
11431016
sly-u.5
for
101256769
sly-u.5
for
101251377
sot-r.1
for
102581041
sot-r.1
for
102604325
nta-r.1
for
107797495
nta-r.1
for
107766982
nta-r.1
for
107796507
osa-u.5
for
4347821
osa-u.5
for
9270000
zma-u.5
for
103644288
zma-u.5
for
100280495
zma-u.5
for
100193566
tae-r.2
for
123122580
tae-r.2
for
123088115
tae-r.2
for
123098747
hvu-r.1
for
123451939
hvu-r.1
for
123449680
sbi-r.1
for
8077246
sbi-r.1
for
8085498
sbi-r.1
for
110430328
bdi-r.1
for
100837019
bdi-r.1
for
100834139
cre-r.1
for
CHLRE_01g069472v5


Ortholog ID: 1960
Species bna bna bna bra bra bra ath ath ath ghi ghi ghi cit cit gma gma gma vvi vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi cre
Symbol LOC106445932 LOC106352661 LOC111211565 LOC103867896 LOC103850130 LOC103856987 SYCO ARATH AT3G56300 AT5G38830 LOC107894094 LOC107947014 LOC107947024 LOC102624731 LOC102608826 LOC100786700 LOC100777447 LOC100812332 LOC100854736 LOC100251639 LOC100245851 LOC7475579 LOC7458385 LOC11432999 LOC11431016 LOC101256769 LOC101251377 LOC102581041 LOC102604325 LOC107766982 LOC107796507 LOC107818984 LOC4347821 LOC9270000 LOC103644288 LOC100193566 LOC100192902 LOC123098747 LOC123104780 LOC123113064 LOC123451939 LOC123449680 LOC8077246 LOC8085498 LOC110430328 LOC100837019 LOC100834139 CHLRE_01g069472v5
Function* cysteine--tRNA ligase 2, cytoplasmic-like cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase 2, cytoplasmic-like cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase 2, cytoplasmic-like Cysteinyl-tRNA synthetase, class Ia family protein Cysteinyl-tRNA synthetase, class Ia family protein Cysteinyl-tRNA synthetase, class Ia family protein cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase, chloroplastic/mitochondrial-like cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial-like cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial-like Cysteine--tRNA ligase 1 cytoplasmic Cysteine--tRNA ligase chloroplastic/mitochondrial cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial-like cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase, chloroplastic/mitochondrial-like cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 7
bna03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 2
bra00520 Amino sugar and nucleotide sugar metabolism 2
bra01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 5
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 5
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 3
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
sot00970 Aminoacyl-tRNA biosynthesis 2
sot04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00780 Biotin metabolism 3
nta01240 Biosynthesis of cofactors 3
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00780 Biotin metabolism 4
nta01240 Biosynthesis of cofactors 4
nta03040 Spliceosome 3
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 7
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 9
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 7
tae03040 Spliceosome 2
tae04141 Protein processing in endoplasmic reticulum 2
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
hvu00970 Aminoacyl-tRNA biosynthesis 3
hvu00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 5
sbi01200 Carbon metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
bdi00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 4
bdi00970 Aminoacyl-tRNA biosynthesis 3
bdi00020 Citrate cycle (TCA cycle) 3
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00860 Porphyrin metabolism 5
cre01240 Biosynthesis of cofactors 4
cre03060 Protein export 2
cre00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106445932 106352661 111211565 103867896 103850130 103856987 817673 824797 833874 107894094 107947014 107947024 102624731 102608826 100786700 100777447 100812332 100854736 100251639 100245851 7475579 7458385 11432999 11431016 101256769 101251377 102581041 102604325 107766982 107796507 107818984 4347821 9270000 103644288 100193566 100192902 123098747 123104780 123113064 123451939 123449680 8077246 8085498 110430328 100837019 100834139 5725796
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