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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125586338   U-box domain-containing protein 4-like 
 ath-u.5   PUB4   RING/U-box superfamily protein with ARM repeat domain-containing protein 
 gma-u.5   100813786   U-box domain-containing protein 4 
 gma-u.5   100794660   U-box domain-containing protein 4 
 gma-u.5   100777715   U-box domain-containing protein 4 
 vvi-u.5   100257770   U-box domain-containing protein 4 
 ppo-u.5   18101152   U-box domain-containing protein 4 
 ppo-u.5   7489758   U-box domain-containing protein 4 
 mtr-u.5   25491020   U-box domain-containing protein 4 
 sly-u.5   101244851   U-box domain-containing protein 4-like 
 sly-u.5   101265159   U-box domain-containing protein 4-like 
 osa-u.5   4344480   U-box domain-containing protein 4 
 zma-u.5   103653150   U-box domain-containing protein 4 
 zma-u.5   103652393   U-box domain-containing protein 4 
 zma-u.5   100501378   U-box domain-containing protein 4 

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Top 50 coexpressed genes to 125586338 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125586338 (bna-r.1 coexpression data)

CoexMap"125586338"


bnaLOC125586338 | Entrez gene ID : 125586338    
Species bna ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta
Paralog 1 1 3 1 2 1 2 1 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016567 [list] [network] protein ubiquitination  (1065 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (16489 genes)  IEA  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (1079 genes)  IEA  
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_048612305.1 [sequence] [blastp]
XP_048612306.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 4,  nucl 1  (predict for XP_048612305.1)
cyto 4,  nucl 3,  nucl_plas 2,  cyto_E.R. 2  (predict for XP_048612306.1)
Subcellular
localization
TargetP
other 7,  scret 5  (predict for XP_048612305.1)
other 8  (predict for XP_048612306.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125586338

.
ath-u.5
for
PUB4

.
gma-u.5
for
100813786

.
gma-u.5
for
100794660

.
gma-u.5
for
100777715

.
vvi-u.5
for
100257770

.
ppo-u.5
for
18101152

.
ppo-u.5
for
7489758

.
mtr-u.5
for
25491020

.
sly-u.5
for
101244851

.
sly-u.5
for
101265159

.
osa-u.5
for
4344480

.
zma-u.5
for
103653150

.
zma-u.5
for
103652393

.
zma-u.5
for
100501378

.


Ortholog ID: 4348
Species ath gma gma sly osa zma zma bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna sbi sot sot cit bdi bdi nta nta
Symbol PUB4 LOC100794660 LOC100813786 LOC101265159 LOC4344480 LOC103653150 LOC103652393 LOC103842428 LOC100257770 LOC18101152 LOC7489758 LOC25491020 LOC123062801 LOC123072795 LOC123445660 LOC123444734 LOC107948562 LOC107931689 LOC106415644 LOC8064368 LOC102596946 LOC102601332 LOC102619744 LOC100824267 LOC100823278 LOC107821059 LOC107827358
Function* RING/U-box superfamily protein with ARM repeat domain-containing protein U-box domain-containing protein 4 U-box domain-containing protein 4 U-box domain-containing protein 4-like U-box domain-containing protein 4 U-box domain-containing protein 4 U-box domain-containing protein 4 U-box domain-containing protein 4 U-box domain-containing protein 4 U-box domain-containing protein 4 U-box domain-containing protein 4 U-box domain-containing protein 4 U-box domain-containing protein 4 U-box domain-containing protein 4 U-box domain-containing protein 4 U-box domain-containing protein 4-like U-box domain-containing protein 4 U-box domain-containing protein 4 U-box domain-containing protein 4-like U-box domain-containing protein 4 U-box domain-containing protein 4-like U-box domain-containing protein 4-like U-box domain-containing protein 4 U-box domain-containing protein 4 U-box domain-containing protein 4 U-box domain-containing protein 4-like U-box domain-containing protein 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00564 Glycerophospholipid metabolism 2
gma00592 alpha-Linolenic acid metabolism 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00564 Glycerophospholipid metabolism 3
sly00561 Glycerolipid metabolism 2
sly04070 Phosphatidylinositol signaling system 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04626 Plant-pathogen interaction 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 3
ppo04144 Endocytosis 3
ppo05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 2
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 3
hvu01240 Biosynthesis of cofactors 3
hvu04626 Plant-pathogen interaction 2
hvu00040 Pentose and glucuronate interconversions 2
hvu00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 4
sbi00051 Fructose and mannose metabolism 3
sbi00520 Amino sugar and nucleotide sugar metabolism 3
sbi01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 4
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
nta04122 Sulfur relay system 2
nta00290 Valine, leucine and isoleucine biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816846 100794660 100813786 101265159 4344480 103653150 103652393 103842428 100257770 18101152 7489758 25491020 123062801 123072795 123445660 123444734 107948562 107931689 106415644 8064368 102596946 102601332 102619744 100824267 100823278 107821059 107827358
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