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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125593278   pre-rRNA-processing protein TSR2 homolog 
 bna-r.1   125576573   pre-rRNA-processing protein TSR2-like 
 bra-r.6   103837320   pre-rRNA-processing protein TSR2 homolog 
 bra-r.6   103874831   pre-rRNA-processing protein TSR2 homolog 
 ath-u.5   AT3G22510   Pre-rRNA-processing protein TSR2, conserved region 
 ath-u.5   AT5G27990   Pre-rRNA-processing protein TSR2, conserved region 
 ghi-r.1   107937892   pre-rRNA-processing protein TSR2 
 ghi-r.1   107963020   pre-rRNA-processing protein TSR2 homolog 
 gma-u.5   100795708   pre-rRNA-processing protein TSR2 homolog 
 gma-u.5   100817824   pre-rRNA-processing protein TSR2 
 vvi-u.5   100267566   uncharacterized LOC100267566 
 ppo-u.5   112325891   uncharacterized LOC112325891 
 ppo-u.5   18110972   uncharacterized LOC18110972 
 mtr-u.5   11407204   pre-rRNA-processing protein TSR2 homolog 
 sly-u.5   101248332   uncharacterized LOC101248332 
 sot-r.1   102594111   pre-rRNA-processing protein TSR2 homolog 
 nta-r.1   107770335   uncharacterized LOC107770335 
 nta-r.1   107761442   uncharacterized LOC107761442 
 nta-r.1   107807895   uncharacterized LOC107807895 
 osa-u.5   4345991   pre-rRNA-processing protein TSR2 
 zma-u.5   100280550   uncharacterized LOC100280550 
 tae-r.2   123095627   pre-rRNA-processing protein TSR2 
 tae-r.2   123112875   pre-rRNA-processing protein TSR2 
 tae-r.2   123087346   pre-rRNA-processing protein TSR2 
 hvu-r.1   123446947   pre-rRNA-processing protein TSR2-like 
 sbi-r.1   110435047   uncharacterized LOC110435047 
 sbi-r.1   8057206   pre-rRNA-processing protein TSR2 
 bdi-r.1   100829457   pre-rRNA-processing protein TSR2 
 bdi-r.1   100834341   pre-rRNA-processing protein TSR2 
 cre-r.1   CHLRE_10g426250v5   uncharacterized protein 

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Top 50 coexpressed genes to 125593278 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125593278 (bna-r.1 coexpression data)

CoexMap"125593278"


bnaLOC125593278 | Entrez gene ID : 125593278    
Species bna bra ath ghi gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre cit
Paralog 2 2 2 2 2 1 2 1 1 1 3 1 1 3 1 2 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000462 [list] [network] maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (142 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
Protein XP_048625641.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  extr 3,  nucl 1,  cyto 1,  mito 1,  golg 1,  cyto_nucl 1  (predict for XP_048625641.1)
Subcellular
localization
TargetP
other 8  (predict for XP_048625641.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125593278
bna-r.1
for
125576573
bra-r.6
for
103837320
bra-r.6
for
103874831
ath-u.5
for
AT3G22510
ath-u.5
for
AT5G27990
ghi-r.1
for
107937892
ghi-r.1
for
107963020
gma-u.5
for
100795708
gma-u.5
for
100817824
vvi-u.5
for
100267566
ppo-u.5
for
112325891
ppo-u.5
for
18110972
mtr-u.5
for
11407204
sly-u.5
for
101248332
sot-r.1
for
102594111
nta-r.1
for
107770335
nta-r.1
for
107761442
nta-r.1
for
107807895
osa-u.5
for
4345991
zma-u.5
for
100280550
tae-r.2
for
123095627
tae-r.2
for
123112875
tae-r.2
for
123087346
hvu-r.1
for
123446947
sbi-r.1
for
110435047
sbi-r.1
for
8057206
bdi-r.1
for
100829457
bdi-r.1
for
100834341
cre-r.1
for
CHLRE_10g426250v5


Ortholog ID: 2474
Species bna bra bra ath ath ghi ghi gma gma vvi ppo ppo mtr sly sot nta nta nta osa zma tae tae hvu sbi sbi bdi bdi cre
Symbol LOC106360647 LOC103837320 LOC103874831 AT3G22510 AT5G27990 LOC107937892 LOC107963020 LOC100795708 LOC100500102 LOC100267566 LOC112325891 LOC18110972 LOC11407204 LOC101248332 LOC102594111 LOC107770335 LOC107761442 LOC107807895 LOC4345991 LOC100280550 LOC123095627 LOC123132052 LOC123446947 LOC110435047 LOC8057206 LOC100829457 LOC100834341 CHLRE_10g426250v5
Function* pre-rRNA-processing protein TSR2 homolog pre-rRNA-processing protein TSR2 homolog pre-rRNA-processing protein TSR2 homolog Pre-rRNA-processing protein TSR2, conserved region Pre-rRNA-processing protein TSR2, conserved region pre-rRNA-processing protein TSR2 pre-rRNA-processing protein TSR2 homolog pre-rRNA-processing protein TSR2 homolog uncharacterized LOC100500102 uncharacterized LOC100267566 uncharacterized LOC112325891 uncharacterized LOC18110972 pre-rRNA-processing protein TSR2 homolog uncharacterized LOC101248332 pre-rRNA-processing protein TSR2 homolog uncharacterized LOC107770335 uncharacterized LOC107761442 uncharacterized LOC107807895 pre-rRNA-processing protein TSR2 uncharacterized LOC100280550 pre-rRNA-processing protein TSR2 uncharacterized LOC123132052 pre-rRNA-processing protein TSR2-like uncharacterized LOC110435047 pre-rRNA-processing protein TSR2 pre-rRNA-processing protein TSR2 pre-rRNA-processing protein TSR2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 3
bra00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
zma03018 RNA degradation 6
zma03020 RNA polymerase 2
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 9
sbi03040 Spliceosome 7
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106360647 103837320 103874831 821822 832869 107937892 107963020 100795708 100500102 100267566 112325891 18110972 11407204 101248332 102594111 107770335 107761442 107807895 4345991 100280550 123095627 123132052 123446947 110435047 8057206 100829457 100834341 5728182
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