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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g426250v5   uncharacterized protein 
 ath-u.5   AT3G22510   Pre-rRNA-processing protein TSR2, conserved region 
 ath-u.5   AT5G27990   Pre-rRNA-processing protein TSR2, conserved region 
 gma-u.5   100817824   pre-rRNA-processing protein TSR2 
 gma-u.5   100795708   pre-rRNA-processing protein TSR2 homolog 
 sly-u.5   101248332   uncharacterized LOC101248332 
 osa-u.5   4345991   pre-rRNA-processing protein TSR2 
 zma-u.5   100280550   uncharacterized LOC100280550 
 vvi-u.5   100267566   uncharacterized LOC100267566 
 ppo-u.5   18110972   uncharacterized LOC18110972 
 ppo-u.5   112325891   uncharacterized LOC112325891 
 mtr-u.5   11407204   pre-rRNA-processing protein TSR2 homolog 

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Top 50 coexpressed genes to CHLRE_10g426250v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g426250v5 (cre-r.1 coexpression data)

CoexMap"5728182"


creCHLRE_10g426250v5 | Entrez gene ID : 5728182    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000462 [list] [network] maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (29 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
Protein XP_042919953.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 3,  cyto 1,  cyto_mito 1,  mito_plas 1  (predict for XP_042919953.1)
Subcellular
localization
TargetP
mito 6,  other 5  (predict for XP_042919953.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g426250v5

.
ath-u.5
for
AT3G22510

.
ath-u.5
for
AT5G27990

.
gma-u.5
for
100817824

.
gma-u.5
for
100795708

.
sly-u.5
for
101248332

.
osa-u.5
for
4345991

.
zma-u.5
for
100280550

.
vvi-u.5
for
100267566

.
ppo-u.5
for
18110972

.
ppo-u.5
for
112325891

.
mtr-u.5
for
11407204

.


Ortholog ID: 2474
Species ath ath gma sly osa zma bra vvi ppo tae hvu ghi cre sbi sot bdi bdi nta nta
Symbol AT3G22510 AT5G27990 LOC100795708 LOC101248332 LOC4345991 LOC100280550 LOC103874831 LOC100267566 LOC112325891 LOC123095627 LOC123446947 LOC107937892 CHLRE_10g426250v5 LOC8057206 LOC102594111 LOC100829457 LOC100834341 LOC107761442 LOC107807895
Function* Pre-rRNA-processing protein TSR2, conserved region Pre-rRNA-processing protein TSR2, conserved region pre-rRNA-processing protein TSR2 homolog uncharacterized LOC101248332 pre-rRNA-processing protein TSR2 uncharacterized LOC100280550 pre-rRNA-processing protein TSR2 homolog uncharacterized LOC100267566 uncharacterized LOC112325891 pre-rRNA-processing protein TSR2 pre-rRNA-processing protein TSR2-like pre-rRNA-processing protein TSR2 uncharacterized protein pre-rRNA-processing protein TSR2 pre-rRNA-processing protein TSR2 homolog pre-rRNA-processing protein TSR2 pre-rRNA-processing protein TSR2 uncharacterized LOC107761442 uncharacterized LOC107807895
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
zma03018 RNA degradation 6
zma03020 RNA polymerase 2
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 3
bra00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 9
sbi03040 Spliceosome 7
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821822 832869 100795708 101248332 4345991 100280550 103874831 100267566 112325891 123095627 123446947 107937892 5728182 8057206 102594111 100829457 100834341 107761442 107807895
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