ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	125596410	uncharacterized LOC125596410
bna-r.1	106349124	uncharacterized LOC106349124
bna-r.1	111212537	uncharacterized LOC111212537
bna-r.1	106354060	uncharacterized LOC106354060
bra-r.6	103875090	uncharacterized LOC103875090
bra-r.6	103854144	uncharacterized LOC103854144
bra-r.6	103831330	uncharacterized LOC103831330
ath-u.5	AT3G29270	RING/U-box superfamily protein
ath-u.5	AT1G69330	RING/U-box superfamily protein
ghi-r.1	107910128	uncharacterized LOC107910128
ghi-r.1	107911824	uncharacterized LOC107911824
ghi-r.1	107920580	uncharacterized LOC107920580
cit-r.1	102609192	uncharacterized LOC102609192
gma-u.5	100796991	uncharacterized LOC100796991
gma-u.5	100499984	uncharacterized LOC100499984
gma-u.5	100809368	uncharacterized LOC100809368
vvi-u.5	100241642	uncharacterized LOC100241642
vvi-u.5	100854732	uncharacterized LOC100854732
ppo-u.5	7484736	uncharacterized LOC7484736
ppo-u.5	7463053	uncharacterized LOC7463053
ppo-u.5	7484557	uncharacterized LOC7484557
mtr-u.5	11407689	uncharacterized LOC11407689
mtr-u.5	11420138	uncharacterized LOC11420138
sly-u.5	101266380	uncharacterized LOC101266380
sot-r.1	102594483	uncharacterized LOC102594483
nta-r.1	107770092	uncharacterized LOC107770092
nta-r.1	107777864	uncharacterized LOC107777864
osa-u.5	4332028	uncharacterized LOC4332028
osa-u.5	4333163	uncharacterized LOC4333163
zma-u.5	100285712	RING zinc finger protein-like
zma-u.5	100283429	RING zinc finger protein-like
zma-u.5	100281187	RING zinc finger protein-like
tae-r.2	123098293	uncharacterized LOC123098293
tae-r.2	123085038	uncharacterized LOC123085038
tae-r.2	123093014	uncharacterized LOC123093014
hvu-r.1	123449349	uncharacterized LOC123449349
sbi-r.1	8066033	RING finger protein 222
sbi-r.1	8081845	uncharacterized LOC8081845
bdi-r.1	100833943	uncharacterized LOC100833943

Top 50 coexpressed genes to 125596410 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 125596410 (bna-r.1 coexpression data)

CoexMap"125596410"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_048627515.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 3, golg 2, E.R._plas 2, E.R. 1, pero 1, nucl_plas 1, mito_plas 1, cyto_plas 1

(predict for XP_048627515.1)

Subcellular
localization
TargetP

other 5, mito 3

(predict for XP_048627515.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 125596410	bna-r.1 for 106349124	bna-r.1 for 111212537	bna-r.1 for 106354060	bra-r.6 for 103875090	bra-r.6 for 103854144	bra-r.6 for 103831330	ath-u.5 for AT3G29270	ath-u.5 for AT1G69330	ghi-r.1 for 107910128	ghi-r.1 for 107911824	ghi-r.1 for 107920580	cit-r.1 for 102609192	gma-u.5 for 100796991	gma-u.5 for 100499984	gma-u.5 for 100809368	vvi-u.5 for 100241642	vvi-u.5 for 100854732	ppo-u.5 for 7484736	ppo-u.5 for 7463053	ppo-u.5 for 7484557	mtr-u.5 for 11407689	mtr-u.5 for 11420138	sly-u.5 for 101266380	sot-r.1 for 102594483	nta-r.1 for 107770092	nta-r.1 for 107777864	osa-u.5 for 4332028	osa-u.5 for 4333163	zma-u.5 for 100285712	zma-u.5 for 100283429	zma-u.5 for 100281187	tae-r.2 for 123098293	tae-r.2 for 123085038	tae-r.2 for 123093014	hvu-r.1 for 123449349	sbi-r.1 for 8066033	sbi-r.1 for 8081845	bdi-r.1 for 100833943

Ortholog

Ortholog ID: 2911

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC106349124

RING finger protein 222

uncharacterized BNAC07G25710D

uncharacterized LOC103875090

uncharacterized LOC103854144

uncharacterized LOC103831330

RING/U-box superfamily protein

uncharacterized LOC107943549

uncharacterized LOC121229614

uncharacterized LOC107887364

uncharacterized LOC102609192

uncharacterized LOC100796991

uncharacterized LOC100499984

uncharacterized LOC100811549

uncharacterized LOC100241642

uncharacterized LOC100854732

uncharacterized LOC7484736

uncharacterized LOC7484557

uncharacterized LOC7492895

uncharacterized LOC11407689

uncharacterized LOC11420138

uncharacterized LOC101266380

uncharacterized LOC102594483

uncharacterized LOC107770092

uncharacterized LOC107777864

uncharacterized LOC4332028

uncharacterized LOC4333163

RING zinc finger protein-like

uncharacterized LOC123098293

uncharacterized LOC123085038

uncharacterized LOC123093014

uncharacterized LOC123449349

RING finger protein 222

uncharacterized LOC8081845

uncharacterized LOC100833943

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00600	Sphingolipid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	3
bra04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	6
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04382	Cornified envelope formation	3
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00562	Inositol phosphate metabolism	4
ghi04070	Phosphatidylinositol signaling system	4
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00030	Pentose phosphate pathway	2
ghi00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01230	Biosynthesis of amino acids	3
cit01200	Carbon metabolism	3
cit00030	Pentose phosphate pathway	2
cit00710	Carbon fixation by Calvin cycle	2
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	2
gma00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	2
gma04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00280	Valine, leucine and isoleucine degradation	2
gma00650	Butanoate metabolism	2
gma00900	Terpenoid backbone biosynthesis	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	2
ppo04142	Lysosome	2
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2
sly04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	4
nta04814	Motor proteins	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	4
nta04814	Motor proteins	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	4
tae04148	Efferocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

106349124

106405651

106407190

103875090

103854144

103831330

822584

843265

107943549

121229614

107887364

102609192

100796991

100499984

100811549

100241642

100854732

7484736

7484557

7492895

11407689

11420138

101266380

102594483

107770092

107777864

4332028

4333163

100285712

100283429

100281187

123098293

123085038

123093014

123449349

8066033

8081845

100833943

The preparation time of this page was 0.3 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	2	3	1	3	2	3	2	1	1	2	2	3	3	1	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 125596410 (bna-r.1 coexpression data)

Top 50 enrichment test to 125596410 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**