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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7456326   pentatricopeptide repeat-containing protein At3g22470, mitochondrial 
 ppo-u.5   7455414   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 ppo-u.5   7459907   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 gma-u.5   100786599   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 gma-u.5   100789435   pentatricopeptide repeat-containing protein At1g62930, chloroplastic 
 mtr-u.5   11411617   pentatricopeptide repeat-containing protein At1g62930, chloroplastic 
 mtr-u.5   120576066   protein Rf1, mitochondrial 
 mtr-u.5   120576067   pentatricopeptide repeat-containing protein At1g12300, mitochondrial 
 ath-u.5   RPF3   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103866658   pentatricopeptide repeat-containing protein At4g26800 
 bra-r.6   103843546   pentatricopeptide repeat-containing protein At1g06580 
 bra-r.6   103843127   pentatricopeptide repeat-containing protein At1g12620-like 
 vvi-u.5   100265584   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 vvi-u.5   100252034   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 vvi-u.5   100244169   pentatricopeptide repeat-containing protein At1g63330 
 ghi-r.1   107903764   pentatricopeptide repeat-containing protein At1g12300, mitochondrial 
 ghi-r.1   107903780   pentatricopeptide repeat-containing protein At3g22470, mitochondrial 
 ghi-r.1   107914690   pentatricopeptide repeat-containing protein At1g63330 
 bna-r.1   106397817   pentatricopeptide repeat-containing protein At1g12300, mitochondrial 
 sly-u.5   104647283   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 sly-u.5   101244875   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 sot-r.1   102588542   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 sot-r.1   102598006   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 sot-r.1   102600917   pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like 
 nta-r.1   107787446   uncharacterized LOC107787446 
 nta-r.1   107799753   uncharacterized LOC107799753 
 nta-r.1   107770637   uncharacterized LOC107770637 

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Top 50 coexpressed genes to 7456326 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7456326 (ppo-u.5 coexpression data)

CoexMap"127905338"


ppoLOC127905338 | Entrez gene ID : 127905338    
Species ppo gma mtr ath bra vvi ghi bna sly sot nta cit bdi zma cre hvu sbi osa tae
Paralog 3 2 3 1 3 3 3 1 2 3 3 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_052308931.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  chlo 2,  plas 2,  mito 1,  cysk_nucl 1  (predict for XP_052308931.1)
Subcellular
localization
TargetP
mito 6,  other 3  (predict for XP_052308931.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7456326
ppo-u.5
for
7455414
ppo-u.5
for
7459907
gma-u.5
for
100786599
gma-u.5
for
100789435
mtr-u.5
for
11411617
mtr-u.5
for
120576066
mtr-u.5
for
120576067
ath-u.5
for
RPF3
bra-r.6
for
103866658
bra-r.6
for
103843546
bra-r.6
for
103843127
vvi-u.5
for
100265584
vvi-u.5
for
100252034
vvi-u.5
for
100244169
ghi-r.1
for
107903764
ghi-r.1
for
107903780
ghi-r.1
for
107914690
bna-r.1
for
106397817
sly-u.5
for
104647283
sly-u.5
for
101244875
sot-r.1
for
102588542
sot-r.1
for
102598006
sot-r.1
for
102600917
nta-r.1
for
107787446
nta-r.1
for
107799753
nta-r.1
for
107770637


Ortholog ID: 117
Species ppo gma gma gma mtr mtr ath ath ath bra bra bra vvi vvi vvi ghi ghi ghi bna bna sly sly sot sot sot nta nta nta
Symbol LOC18106937 LOC102663208 LOC102663951 LOC121173775 LOC11419137 LOC11422222 AT1G64580 AT1G62914 AT5G16640 LOC103866658 LOC103843103 LOC103843088 LOC100258882 LOC100852554 LOC100253509 LOC107903764 LOC107903763 LOC121203206 LOC106420242 LOC106397711 LOC104647283 LOC101266330 LOC102604609 LOC102597388 LOC102606410 LOC107770637 LOC107821834 LOC107811862
Function* pentatricopeptide repeat-containing protein At1g62930, chloroplastic pentatricopeptide repeat-containing protein At1g12300, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial uncharacterized LOC121173775 putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial pentatricopeptide repeat-containing protein At1g62910 Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide (PPR) repeat-containing protein Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At4g26800 pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like pentatricopeptide repeat-containing protein At1g12620 pentatricopeptide repeat-containing protein At1g62914, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial pentatricopeptide repeat-containing protein At1g12300, mitochondrial pentatricopeptide repeat-containing protein At1g63330 pentatricopeptide repeat-containing protein At3g22470, mitochondrial pentatricopeptide repeat-containing protein At1g64580 pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial uncharacterized LOC107770637 uncharacterized LOC107821834 uncharacterized LOC107811862
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00220 Arginine biosynthesis 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi03250 Viral life cycle - HIV-1 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00460 Cyanoamino acid metabolism 2
sot00500 Starch and sucrose metabolism 2
sot00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 5
nta03030 DNA replication 3
nta03420 Nucleotide excision repair 3
nta03440 Homologous recombination 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 18106937 102663208 102663951 121173775 11419137 11422222 842766 10723105 831526 103866658 103843103 103843088 100258882 100852554 100253509 107903764 107903763 121203206 106420242 106397711 104647283 101266330 102604609 102597388 102606410 107770637 107821834 107811862
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