ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	4328207	cyclin-T1-1
osa-u.5	4349827	cyclin-T1-3-like
osa-u.5	4352229	cyclin-T1-4-like
zma-u.5	103654263	protein trichome birefringence-like 28
zma-u.5	100217076	uncharacterized LOC100217076
zma-u.5	100383879	uncharacterized LOC100383879
ath-u.5	CYCT1;2	Cyclin family protein
ath-u.5	CYCT1;4	Cyclin family protein
ath-u.5	AT5G45190	Cyclin family protein
gma-u.5	100803349	cyclin-T1-3
gma-u.5	100808446	cyclin-T1-5
gma-u.5	100778842	cyclin-T1-5-like
sly-u.5	101250904	cyclin-T1-3
sly-u.5	101260979	cyclin-T1-3
vvi-u.5	100266147	cyclin-T1-3
vvi-u.5	100256429	cyclin-T1-3
vvi-u.5	100265067	cyclin-T1-5
ppo-u.5	7492107	cyclin-T1-3
ppo-u.5	7456334	cyclin-T1-3
ppo-u.5	7464855	cyclin-T1-5
mtr-u.5	11444662	cyclin-T1-3
mtr-u.5	11416403	cyclin-T1-5

Annotation

functional annotation

KEGG

osa03250 [list] [network] Viral life cycle - HIV-1 (34 genes)

GO BP

GO:0032786 [list] [network] positive regulation of DNA-templated transcription, elongation	(25 genes)	IEA
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II	(380 genes)	IEA

GO CC

GO:0008024 [list] [network] cyclin/CDK positive transcription elongation factor complex	(4 genes)	IEA
GO:0005634 [list] [network] nucleus	(3003 genes)	IEA

GO MF

GO:0061575 [list] [network] cyclin-dependent protein serine/threonine kinase activator activity

(5 genes)

IEA

Protein

XP_066161564.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto 1, plas 1, cyto_plas 1

(predict for XP_066161564.1)

Subcellular
localization
TargetP

other 8

(predict for XP_066161564.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4328207	osa-u.5 for 4349827	osa-u.5 for 4352229	zma-u.5 for 103654263	zma-u.5 for 100217076	zma-u.5 for 100383879	ath-u.5 for CYCT1;2	ath-u.5 for CYCT1;4	ath-u.5 for AT5G45190	gma-u.5 for 100803349	gma-u.5 for 100808446	gma-u.5 for 100778842	sly-u.5 for 101250904	sly-u.5 for 101260979	vvi-u.5 for 100266147	vvi-u.5 for 100256429	vvi-u.5 for 100265067	ppo-u.5 for 7492107	ppo-u.5 for 7456334	ppo-u.5 for 7464855	mtr-u.5 for 11444662	mtr-u.5 for 11416403

Ortholog

Ortholog ID: 936

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

CYCT1;2

CYCT1;4

Function^*

cyclin-T1-1

cyclin-T1-3-like

cyclin-T1-3

cyclin-T1-4-like

cyclin-T1-3-like

cyclin-T1-4

cyclin-T1-3

cyclin-T1-1

cyclin-T1-4

cyclin-T1-3

Cyclin family protein

cyclin-T1-3

cyclin-T1-4

cyclin-T1-5

cyclin-T1-3

cyclin-T1-4

cyclin-T1-5

cyclin-T1-4

cyclin-T1-3

cyclin-T1-3-like

cyclin-T1-4-like

cyclin-T1-3-like

cyclin-T1-5

cyclin-T1-3-like

cyclin-T1-3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	4
tae03008	Ribosome biogenesis in eukaryotes	3
tae03083	Polycomb repressive complex	3
tae04712	Circadian rhythm - plant	3
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	4
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	3
zma00561	Glycerolipid metabolism	2
zma00564	Glycerophospholipid metabolism	2
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03440	Homologous recombination	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	4
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03250	Viral life cycle - HIV-1	3
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	5
ppo03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	2
ghi03015	mRNA surveillance pathway	2
ghi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	5
ghi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03250	Viral life cycle - HIV-1	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	3
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03250	Viral life cycle - HIV-1	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	2
nta03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	11
cre03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

4328207

4349827

123091478

123091481

123399216

123427030

100845488

100829376

103630860

103626584

8064072

8070784

827698

827702

100802312

100803349

101250904

101260979

103834124

100265067

100266147

7492107

7497532

11416403

107891752

121203542

106425346

102600355

102605502

102620815

102615961

107764485

107766618

5724594

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4328207 (osa-u.5 coexpression data)

Top 50 enrichment test to 4328207 (osa-u.5 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	3	3	3	3	2	3	3	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4328207 (osa-u.5 coexpression data)

Top 50 enrichment test to 4328207 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**