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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   109121368   pentatricopeptide repeat-containing protein At2g32630 
 sly-u.5   101248348   pentatricopeptide repeat-containing protein At2g32630 
 sot-r.1   102588403   pentatricopeptide repeat-containing protein At2g32630-like 
 sot-r.1   102579684   pentatricopeptide repeat-containing protein At2g28050 
 sot-r.1   102578360   pentatricopeptide repeat-containing protein At2g32630 
 nta-r.1   107762777   uncharacterized LOC107762777 
 nta-r.1   107772459   uncharacterized LOC107772459 
 ath-u.5   AT2G28050   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-u.5   AT2G32630   Pentatricopeptide repeat (PPR-like) superfamily protein 
 gma-u.5   100789169   pentatricopeptide repeat-containing protein At2g32630 
 bra-r.6   103857433   pentatricopeptide repeat-containing protein At2g32630 
 vvi-u.5   100251700   pentatricopeptide repeat-containing protein At2g32630 
 ppo-u.5   18111176   pentatricopeptide repeat-containing protein At2g32630 
 mtr-u.5   11434014   pentatricopeptide repeat-containing protein At2g32630 
 ghi-r.1   107960772   pentatricopeptide repeat-containing protein At2g28050 
 ghi-r.1   107935167   pentatricopeptide repeat-containing protein At2g32630 
 ghi-r.1   107902738   pentatricopeptide repeat-containing protein At2g28050 
 bna-r.1   106437762   pentatricopeptide repeat-containing protein At2g32630 
 bna-r.1   125604629   pentatricopeptide repeat-containing protein At2g32630-like 
 cit-r.1   102607920   pentatricopeptide repeat-containing protein At2g32630 

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Top 50 coexpressed genes to 109121368 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 109121368 (sly-u.5 coexpression data)

CoexMap"138349190"


slyLOC138349190 | Entrez gene ID : 138349190    
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit zma cre sbi tae osa hvu bdi
Paralog 2 3 2 2 1 1 1 1 1 3 2 1 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_069155623.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9  (predict for XP_069155623.1)
Subcellular
localization
TargetP
other 8,  scret 4  (predict for XP_069155623.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
109121368
sly-u.5
for
101248348
sot-r.1
for
102588403
sot-r.1
for
102579684
sot-r.1
for
102578360
nta-r.1
for
107762777
nta-r.1
for
107772459
ath-u.5
for
AT2G28050
ath-u.5
for
AT2G32630
gma-u.5
for
100789169
bra-r.6
for
103857433
vvi-u.5
for
100251700
ppo-u.5
for
18111176
mtr-u.5
for
11434014
ghi-r.1
for
107960772
ghi-r.1
for
107935167
ghi-r.1
for
107902738
bna-r.1
for
106437762
bna-r.1
for
125604629
cit-r.1
for
102607920


Ortholog ID: 10680
Species sly sly sot sot sot nta nta ath ath gma bra vvi ppo mtr ghi ghi ghi bna bna cit
Symbol LOC109121368 LOC101248348 LOC102588403 LOC102579684 LOC102578360 LOC107762777 LOC107772459 AT2G28050 AT2G32630 LOC100789169 LOC103857433 LOC100251700 LOC18111176 LOC11434014 LOC107935167 LOC107902738 LOC107892510 LOC106437762 LOC125604629 LOC102607920
Function* pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g32630-like pentatricopeptide repeat-containing protein At2g28050 pentatricopeptide repeat-containing protein At2g32630 uncharacterized LOC107762777 uncharacterized LOC107772459 Pentatricopeptide repeat (PPR) superfamily protein Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g28050 pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g32630-like pentatricopeptide repeat-containing protein At2g32630
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
nta00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03022 Basal transcription factors 2
nta00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 3
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04122 Sulfur relay system 5
ghi00730 Thiamine metabolism 4
ghi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 109121368 101248348 102588403 102579684 102578360 107762777 107772459 817349 817823 100789169 103857433 100251700 18111176 11434014 107935167 107902738 107892510 106437762 125604629 102607920
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