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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18111176   pentatricopeptide repeat-containing protein At2g32630 
 ppo-r.4   18111176   pentatricopeptide repeat-containing protein At2g32630 
 gma-u.5   100789169   pentatricopeptide repeat-containing protein At2g32630 
 mtr-u.5   11434014   pentatricopeptide repeat-containing protein At2g32630 
 ath-u.5   AT2G28050   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-u.5   AT2G32630   Pentatricopeptide repeat (PPR-like) superfamily protein 
 vvi-u.5   100251700   pentatricopeptide repeat-containing protein At2g32630 
 sly-u.5   109121368   pentatricopeptide repeat-containing protein At2g32630 

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Top 50 coexpressed genes to 18111176 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18111176 (ppo-u.5 coexpression data)

CoexMap"18111176"


ppoLOC18111176 | Entrez gene ID : 18111176    
Species ppo gma mtr ath vvi sly sbi nta bra osa cre cit hvu bdi sot zma tae bna ghi
Paralog 2 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_024453827.1 [sequence] [blastp]
XP_024453828.1 [sequence] [blastp]
XP_024453829.1 [sequence] [blastp]
XP_024453830.1 [sequence] [blastp]
XP_024453832.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  cyto_nucl 4,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_024453827.1)
cyto 5,  cyto_nucl 4,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_024453828.1)
cyto 5,  cyto_nucl 4,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_024453829.1)
cyto 5,  cyto_nucl 4,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_024453830.1)
cyto 5,  cyto_nucl 4,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_024453832.1)
Subcellular
localization
TargetP
other 3  (predict for XP_024453827.1)
other 3  (predict for XP_024453828.1)
other 3  (predict for XP_024453829.1)
other 3  (predict for XP_024453830.1)
other 3  (predict for XP_024453832.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18111176

.
ppo-r.4
for
18111176

.
gma-u.5
for
100789169

.
mtr-u.5
for
11434014

.
ath-u.5
for
AT2G28050

.
ath-u.5
for
AT2G32630

.
vvi-u.5
for
100251700

.
sly-u.5
for
109121368

.


Ortholog ID: 10680
Species ath ath gma sly bra vvi ppo mtr ghi ghi bna bna sot sot cit nta nta
Symbol AT2G32630 AT2G28050 LOC100789169 LOC109121368 LOC103857433 LOC100251700 LOC18111176 LOC11434014 LOC107902738 LOC107892510 LOC125604629 LOC106437762 LOC102578360 LOC102579684 LOC102607920 LOC107772459 LOC107762777
Function* Pentatricopeptide repeat (PPR-like) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g28050 pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g32630-like pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g32630 pentatricopeptide repeat-containing protein At2g28050 pentatricopeptide repeat-containing protein At2g32630 uncharacterized LOC107772459 uncharacterized LOC107762777
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 3
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04122 Sulfur relay system 5
ghi00730 Thiamine metabolism 4
ghi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03022 Basal transcription factors 2
nta00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
nta00513 Various types of N-glycan biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817823 817349 100789169 109121368 103857433 100251700 18111176 11434014 107902738 107892510 125604629 106437762 102578360 102579684 102607920 107772459 107762777
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