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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   142168697   28 kDa ribonucleoprotein, chloroplastic-like 
 sly-u.5   101246091   28 kDa ribonucleoprotein, chloroplastic 
 ath-u.5   AT1G60000   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100820203   31 kDa ribonucleoprotein, chloroplastic-like 
 gma-u.5   100801829   28 kDa ribonucleoprotein, chloroplastic 
 vvi-u.5   104879303   28 kDa ribonucleoprotein, chloroplastic 
 ppo-u.5   7475422   31 kDa ribonucleoprotein, chloroplastic 
 ppo-u.5   7480891   31 kDa ribonucleoprotein, chloroplastic 
 mtr-u.5   11434981   28 kDa ribonucleoprotein, chloroplastic 
 osa-u.5   4331127   28 kDa ribonucleoprotein, chloroplastic 
 zma-u.5   100217196   uncharacterized LOC100217196 

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Top 50 coexpressed genes to 142168697 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 142168697 (nta-r.1 coexpression data)

CoexMap"142168697"


ntaLOC142168697 | Entrez gene ID : 142168697    
Species nta sly ath gma vvi ppo mtr osa zma hvu bna cit bra ghi sbi bdi tae cre sot
Paralog 1 1 1 2 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1901259 [list] [network] chloroplast rRNA processing  (29 genes)  IEA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (195 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (573 genes)  IEA  
Protein XP_075085496.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_075085496.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_075085496.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
142168697
sly-u.5
for
101246091
ath-u.5
for
AT1G60000
gma-u.5
for
100820203
gma-u.5
for
100801829
vvi-u.5
for
104879303
ppo-u.5
for
7475422
ppo-u.5
for
7480891
mtr-u.5
for
11434981
osa-u.5
for
4331127
zma-u.5
for
100217196


Ortholog ID: 10526
Species nta nta sly sot ath gma gma bra vvi ppo ppo mtr ghi ghi bna bna cit osa zma tae tae hvu sbi bdi
Symbol LOC107832323 LOC142168697 LOC101246091 LOC102580020 AT1G60000 LOC100801829 LOC100820203 LOC103838564 LOC104879303 LOC7480891 LOC7475422 LOC11434981 LOC107932168 LOC107940137 LOC106418706 LOC106376601 LOC102626548 LOC4331127 LOC100217196 LOC123135014 LOC123128955 LOC123401763 LOC8084704 LOC100827680
Function* 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic RNA-binding (RRM/RBD/RNP motifs) family protein 28 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 29 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic uncharacterized LOC100217196 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 5
sly00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 5
ath00196 Photosynthesis - antenna proteins 2
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 5
gma00710 Carbon fixation by Calvin cycle 4
gma00030 Pentose phosphate pathway 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 3
gma00710 Carbon fixation by Calvin cycle 3
gma01200 Carbon metabolism 3
gma00030 Pentose phosphate pathway 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00710 Carbon fixation by Calvin cycle 4
bra01200 Carbon metabolism 4
bra00030 Pentose phosphate pathway 3
bra00860 Porphyrin metabolism 2
bra00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 5
vvi01240 Biosynthesis of cofactors 3
vvi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 14
ppo00860 Porphyrin metabolism 2
ppo00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 9
mtr00710 Carbon fixation by Calvin cycle 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 9
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 9
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 6
bna00860 Porphyrin metabolism 4
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 15
bna00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 7
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
zma00030 Pentose phosphate pathway 2
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
bdi00195 Photosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107832323 142168697 101246091 102580020 842294 100801829 100820203 103838564 104879303 7480891 7475422 11434981 107932168 107940137 106418706 106376601 102626548 4331127 100217196 123135014 123128955 123401763 8084704 100827680
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