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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18095966   CRS2-associated factor 2, mitochondrial 
 ppo-r.4   18095966   CRS2-associated factor 2, mitochondrial 
 ppo-u.5   7464885   CRS2-associated factor 1, mitochondrial 
 ppo-u.5   7460776   CRS2-associated factor 2, chloroplastic 
 ppo-u.5   18111101   CRS2-associated factor 1, chloroplastic 
 gma-u.5   102666790   CRS2-associated factor 1, chloroplastic 
 gma-u.5   100805138   CRS2-associated factor 1, chloroplastic 
 gma-u.5   100789092   CRS2-associated factor 2, mitochondrial 
 mtr-u.5   25480604   CRS2-associated factor 2, mitochondrial 
 mtr-u.5   25501489   CRS2-associated factor 2, chloroplastic 
 mtr-u.5   25498880   CRS2-associated factor 1, mitochondrial 
 ath-u.5   CAF1   RNA-binding CRS1 / YhbY (CRM) domain-containing protein 
 ath-u.5   AT4G31010   RNA-binding CRS1 / YhbY (CRM) domain-containing protein 
 ath-u.5   AT5G54890   RNA-binding CRS1 / YhbY (CRM) domain-containing protein 
 vvi-u.5   100265780   CRS2-associated factor 2, mitochondrial 
 vvi-u.5   100264400   CRS2-associated factor 1, mitochondrial 
 vvi-u.5   100259402   CRS2-associated factor 1, chloroplastic 
 sly-u.5   101251009   CRS2-associated factor 2, mitochondrial 
 sly-u.5   101260010   CRS2-associated factor 2, chloroplastic 
 sly-u.5   101265922   CRS2-associated factor 1, chloroplastic 
 osa-u.5   4324537   CRS2-associated factor 1, chloroplastic-like 
 osa-u.5   4326994   CRS2-associated factor 2, chloroplastic 
 osa-u.5   4344787   CRS2-associated factor 1, mitochondrial-like 
 zma-u.5   100272285   CRS2-associated factor 1 mitochondrial 
 zma-u.5   542682   crs2 associated factor 2 
 zma-u.5   542118   CRS2-associated factor 1 

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Top 50 coexpressed genes to 18095966 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18095966 (ppo-u.5 coexpression data)

CoexMap"18095966"


ppoLOC18095966 | Entrez gene ID : 18095966    
Species ppo gma mtr ath vvi sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 5 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000373 [list] [network] Group II intron splicing  (9 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
Protein XP_006370694.3 [sequence] [blastp]
XP_052310783.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  cyto_nucl 4,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_006370694.3)
cyto 5,  cyto_nucl 4,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_052310783.1)
Subcellular
localization
TargetP
mito 3  (predict for XP_006370694.3)
mito 3  (predict for XP_052310783.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18095966

.
ppo-r.4
for
18095966

.
ppo-u.5
for
7464885

.
ppo-u.5
for
7460776

.
ppo-u.5
for
18111101

.
gma-u.5
for
102666790

.
gma-u.5
for
100805138

.
gma-u.5
for
100789092

.
mtr-u.5
for
25480604

.
mtr-u.5
for
25501489

.
mtr-u.5
for
25498880

.
ath-u.5
for
CAF1

.
ath-u.5
for
AT4G31010

.
ath-u.5
for
AT5G54890

.
vvi-u.5
for
100265780

.
vvi-u.5
for
100264400

.
vvi-u.5
for
100259402

.
sly-u.5
for
101251009

.
sly-u.5
for
101260010

.
sly-u.5
for
101265922

.
osa-u.5
for
4324537

.
osa-u.5
for
4326994

.
osa-u.5
for
4344787

.
zma-u.5
for
100272285

.
zma-u.5
for
542682

.
zma-u.5
for
542118

.


Ortholog ID: 945
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi nta nta
Symbol CAF2 AT4G31010 LOC100805138 LOC102666790 LOC101265922 LOC101251009 LOC4344836 LOC4326994 LOC100281604 LOC100272285 LOC103836936 LOC108870510 LOC100265780 LOC100259402 LOC18095966 LOC18111101 LOC25498880 LOC25501489 LOC123132192 LOC123069741 LOC123443554 LOC123443584 LOC107909684 LOC107901273 LOC125592852 LOC125595455 LOC8075295 LOC8069672 LOC102591046 LOC102600530 LOC102617663 LOC102615468 LOC100822139 LOC100827270 LOC107831074 LOC107788616
Function* RNA-binding CRS1 / YhbY (CRM) domain-containing protein RNA-binding CRS1 / YhbY (CRM) domain-containing protein CRS2-associated factor 1, chloroplastic CRS2-associated factor 1, chloroplastic CRS2-associated factor 1, chloroplastic CRS2-associated factor 2, mitochondrial CRS2-associated factor 2, mitochondrial-like CRS2-associated factor 2, chloroplastic uncharacterized LOC100281604 CRS2-associated factor 1 mitochondrial CRS2-associated factor 1, mitochondrial CRS2-associated factor 1, chloroplastic CRS2-associated factor 2, mitochondrial CRS2-associated factor 1, chloroplastic CRS2-associated factor 2, mitochondrial CRS2-associated factor 1, chloroplastic CRS2-associated factor 1, mitochondrial CRS2-associated factor 2, chloroplastic CRS2-associated factor 2, mitochondrial CRS2-associated factor 2, chloroplastic CRS2-associated factor 2, chloroplastic CRS2-associated factor 1, chloroplastic-like CRS2-associated factor 2, chloroplastic CRS2-associated factor 1, chloroplastic CRS2-associated factor 1, mitochondrial-like CRS2-associated factor 2, mitochondrial-like CRS2-associated factor 2, chloroplastic CRS2-associated factor 1, mitochondrial CRS2-associated factor 1, chloroplastic CRS2-associated factor 1, mitochondrial CRS2-associated factor 1, chloroplastic CRS2-associated factor 1, mitochondrial CRS2-associated factor 1, mitochondrial CRS2-associated factor 1, chloroplastic CRS2-associated factor 2, mitochondrial CRS2-associated factor 2, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03020 RNA polymerase 3
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
ghi00430 Taurine and hypotaurine metabolism 2
ghi00460 Cyanoamino acid metabolism 2
ghi00480 Glutathione metabolism 2
ghi00590 Arachidonic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00300 Lysine biosynthesis 2
cit01230 Biosynthesis of amino acids 2
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838948 829228 100805138 102666790 101265922 101251009 4344836 4326994 100281604 100272285 103836936 108870510 100265780 100259402 18095966 18111101 25498880 25501489 123132192 123069741 123443554 123443584 107909684 107901273 125592852 125595455 8075295 8069672 102591046 102600530 102617663 102615468 100822139 100827270 107831074 107788616
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