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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18097791   protein CHROMATIN REMODELING 25 
 ppo-r.4   18097791   protein CHROMATIN REMODELING 25 
 gma-u.5   100781631   protein CHROMATIN REMODELING 25 
 mtr-u.5   25494466   protein CHROMATIN REMODELING 25 
 ath-u.5   RAD54   DNA repair/recombination protein 
 vvi-u.5   100246859   protein CHROMATIN REMODELING 25 
 sly-u.5   101255388   protein CHROMATIN REMODELING 25 
 osa-u.5   4330819   DNA repair and recombination protein RAD54-like 
 zma-u.5   103627774   DNA repair and recombination protein RAD54 

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Top 50 coexpressed genes to 18097791 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18097791 (ppo-u.5 coexpression data)

CoexMap"18097791"


ppoLOC18097791 | Entrez gene ID : 18097791    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03440 [list] [network] Homologous recombination (53 genes)
GO BP
GO:0045003 [list] [network] double-strand break repair via synthesis-dependent strand annealing  (9 genes)  IEA  
GO:0007131 [list] [network] reciprocal meiotic recombination  (37 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0015616 [list] [network] DNA translocase activity  (3 genes)  IEA  
GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity  (53 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_006384415.1 [sequence] [blastp]
XP_024455252.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto_nucl 4,  cyto 1  (predict for XP_006384415.1)
nucl 7,  cyto_nucl 4,  cyto 1  (predict for XP_024455252.1)
Subcellular
localization
TargetP
other 9  (predict for XP_006384415.1)
other 9  (predict for XP_024455252.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18097791

.
ppo-r.4
for
18097791

.
gma-u.5
for
100781631

.
mtr-u.5
for
25494466

.
ath-u.5
for
RAD54

.
vvi-u.5
for
100246859

.
sly-u.5
for
101255388

.
osa-u.5
for
4330819

.
zma-u.5
for
103627774

.


Ortholog ID: 10096
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol RAD54 LOC100781631 LOC101255388 LOC4330819 LOC103627774 LOC103869485 LOC100246859 LOC18097791 LOC25494466 LOC123138366 LOC123145612 LOC123402879 LOC121225640 LOC107894254 LOC111203880 LOC106453924 CHLRE_10g430950v5 LOC8078914 LOC102580628 LOC102614093 LOC100831864 LOC107822142 LOC107823820
Function* DNA repair/recombination protein protein CHROMATIN REMODELING 25 protein CHROMATIN REMODELING 25 DNA repair and recombination protein RAD54-like DNA repair and recombination protein RAD54 protein CHROMATIN REMODELING 25 protein CHROMATIN REMODELING 25 protein CHROMATIN REMODELING 25 protein CHROMATIN REMODELING 25 DNA repair and recombination protein RAD54 DNA repair and recombination protein RAD54 DNA repair and recombination protein RAD54 protein CHROMATIN REMODELING 25 protein CHROMATIN REMODELING 25 protein CHROMATIN REMODELING 25 protein CHROMATIN REMODELING 25-like uncharacterized protein DNA repair and recombination protein RAD54 protein CHROMATIN REMODELING 25 protein CHROMATIN REMODELING 25 DNA repair and recombination protein RAD54 protein CHROMATIN REMODELING 25-like protein CHROMATIN REMODELING 25
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 7
ath03460 Fanconi anemia pathway 4
ath03030 DNA replication 2
ath03420 Nucleotide excision repair 2
ath03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03440 Homologous recombination 2
gma03460 Fanconi anemia pathway 2
gma03030 DNA replication 2
gma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 3
sly04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 2
zma03030 DNA replication 2
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04814 Motor proteins 4
bra03460 Fanconi anemia pathway 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 4
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 5
tae03440 Homologous recombination 4
tae04814 Motor proteins 4
tae03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04814 Motor proteins 5
tae03013 Nucleocytoplasmic transport 4
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 6
ghi03460 Fanconi anemia pathway 2
ghi03440 Homologous recombination 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 6
ghi03460 Fanconi anemia pathway 2
ghi03440 Homologous recombination 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03430 Mismatch repair 3
sot03440 Homologous recombination 2
sot03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 5
bdi04814 Motor proteins 3
bdi03410 Base excision repair 2
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta03440 Homologous recombination 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 4
nta03460 Fanconi anemia pathway 2
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821455 100781631 101255388 4330819 103627774 103869485 100246859 18097791 25494466 123138366 123145612 123402879 121225640 107894254 111203880 106453924 5728084 8078914 102580628 102614093 100831864 107822142 107823820
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