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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5  18098561  pentatricopeptide repeat-containing protein At3g62890 
 ppo-r.4  18098561  pentatricopeptide repeat-containing protein At3g62890 
 gma-u.5  100789149  pentatricopeptide repeat-containing protein At3g62890 
 mtr-u.5  25488960  pentatricopeptide repeat-containing protein At3g62890 
 sly-u.5  101248527  pentatricopeptide repeat-containing protein At3g62890-like 
 osa-u.5  4332647  pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 zma-u.5  100382149  Pentatricopeptide repeat-containing protein mitochondrial 

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Top 50 coexpressed genes to 18098561 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18098561 (ppo-u.5 coexpression data)

CoexMap"18098561"


ppoLOC18098561 | Entrez gene ID : 18098561
Species ppo gma mtr sly osa zma sbi nta bra cre vvi cit hvu bdi sot tae ath bna ghi
Paralog 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (384 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_006382364.2 [sequence] [blastp]
XP_024456108.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1,  plas 1,  E.R. 1,  E.R._plas 1,  mito_plas 1  (predict for XP_006382364.2)
chlo 8,  mito 1,  plas 1,  E.R. 1,  E.R._plas 1,  mito_plas 1  (predict for XP_024456108.1)
Subcellular
localization
TargetP
mito 3  (predict for XP_006382364.2)
mito 3  (predict for XP_024456108.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

ppo-u.5
for
18098561

.

ppo-r.4
for
18098561

.

gma-u.5
for
100789149

.

mtr-u.5
for
25488960

.

sly-u.5
for
101248527

.

osa-u.5
for
4332647

.

zma-u.5
for
100382149

.


Ortholog ID: 13263
Species gma sly osa zma ppo mtr tae tae hvu sot cit bdi nta nta
Symbol LOC100789149 LOC101248527 LOC4332647 LOC100382149 LOC18098561 LOC25488960 LOC123097649 LOC123092311 LOC123448797 LOC102581387 LOC102631336 LOC100826482 LOC107778983 LOC107805918
Function* pentatricopeptide repeat-containing protein At3g62890 pentatricopeptide repeat-containing protein At3g62890-like pentatricopeptide repeat-containing protein At1g05750, chloroplastic Pentatricopeptide repeat-containing protein mitochondrial pentatricopeptide repeat-containing protein At3g62890 pentatricopeptide repeat-containing protein At3g62890 pentatricopeptide repeat-containing protein At1g05750, chloroplastic pentatricopeptide repeat-containing protein At1g05750, chloroplastic pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like pentatricopeptide repeat-containing protein At3g62890-like pentatricopeptide repeat-containing protein At3g62890-like pentatricopeptide repeat-containing protein At1g05750, chloroplastic pentatricopeptide repeat-containing protein At3g62890-like pentatricopeptide repeat-containing protein At3g62890-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100789149 101248527 4332647 100382149 18098561 25488960 123097649 123092311 123448797 102581387 102631336 100826482 107778983 107805918
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