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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18101162   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 ppo-r.4   18101162   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 ppo-u.5   7470747   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 gma-u.5   100792713   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 gma-u.5   100775763   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 mtr-u.5   25493520   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 ath-u.5   AT4G37380   Tetratricopeptide repeat (TPR)-like superfamily protein 
 vvi-u.5   100250784   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 vvi-u.5   100245485   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 sly-u.5   101250049   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 sly-u.5   101265323   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 osa-u.5   4342243   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 zma-u.5   100501514   uncharacterized LOC100501514 

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Top 50 coexpressed genes to 18101162 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18101162 (ppo-u.5 coexpression data)

CoexMap"18101162"


ppoLOC18101162 | Entrez gene ID : 18101162    
Species ppo gma mtr ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 2 1 1 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (384 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_006380676.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 2,  mito 1,  nucl_plas 1  (predict for XP_006380676.2)
Subcellular
localization
TargetP
chlo 6,  other 4  (predict for XP_006380676.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18101162

.
ppo-r.4
for
18101162

.
ppo-u.5
for
7470747

.
gma-u.5
for
100792713

.
gma-u.5
for
100775763

.
mtr-u.5
for
25493520

.
ath-u.5
for
AT4G37380

.
vvi-u.5
for
100250784

.
vvi-u.5
for
100245485

.
sly-u.5
for
101250049

.
sly-u.5
for
101265323

.
osa-u.5
for
4342243

.
zma-u.5
for
100501514

.


Ortholog ID: 5566
Species ath gma gma sly sly osa zma bra bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi sbi sot sot cit cit bdi nta nta
Symbol AT4G37380 LOC100775763 LOC100792713 LOC101250049 LOC101265323 LOC4342243 LOC100501514 LOC103827927 LOC103845341 LOC100250784 LOC100245485 LOC7470747 LOC18101162 LOC25493520 LOC123188868 LOC123052933 LOC123426337 LOC107948565 LOC107912508 LOC8054512 LOC107061362 LOC102599292 LOC102607016 LOC102622905 LOC104581752 LOC107827463 LOC107799398
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic uncharacterized LOC100501514 pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta03015 mRNA surveillance pathway 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829892 100775763 100792713 101250049 101265323 4342243 100501514 103827927 103845341 100250784 100245485 7470747 18101162 25493520 123188868 123052933 123426337 107948565 107912508 8054512 107061362 102599292 102607016 102622905 104581752 107827463 107799398
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