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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102607016   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 ath-u.5   AT4G37380   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100775763   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 gma-u.5   100792713   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 vvi-u.5   100250784   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 vvi-u.5   100245485   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 ppo-u.5   18101162   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 ppo-u.5   7470747   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 mtr-u.5   25493520   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 sly-u.5   101250049   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 sly-u.5   101265323   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 osa-u.5   4342243   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 zma-u.5   100501514   uncharacterized LOC100501514 

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Top 50 coexpressed genes to 102607016 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102607016 (cit-r.1 coexpression data)

CoexMap"102607016"


citLOC102607016 | Entrez gene ID : 102607016    
Species cit ath gma vvi ppo mtr sly osa zma bdi hvu bra bna sbi ghi sot nta cre tae
Paralog 1 1 2 2 2 1 2 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (369 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (771 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1117 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3939 genes)  IEA  
Protein XP_006469338.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 2  (predict for XP_006469338.3)
Subcellular
localization
TargetP
chlo 8,  other 3  (predict for XP_006469338.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102607016
ath-u.5
for
AT4G37380
gma-u.5
for
100775763
gma-u.5
for
100792713
vvi-u.5
for
100250784
vvi-u.5
for
100245485
ppo-u.5
for
18101162
ppo-u.5
for
7470747
mtr-u.5
for
25493520
sly-u.5
for
101250049
sly-u.5
for
101265323
osa-u.5
for
4342243
zma-u.5
for
100501514


Ortholog ID: 5566
Species cit cit ath bra bra ghi ghi gma gma vvi vvi ppo ppo mtr sly sly sot sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC102607016 LOC102622905 AT4G37380 LOC103827927 LOC103845341 LOC107948565 LOC107912508 LOC100775763 LOC100792713 LOC100250784 LOC100245485 LOC7470747 LOC18101162 LOC25493520 LOC101250049 LOC101265323 LOC107061362 LOC102599292 LOC107827463 LOC107799398 LOC4342243 LOC100501514 LOC123188868 LOC123052933 LOC123426337 LOC8054512 LOC104581752
Function* putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic-like pentatricopeptide repeat-containing protein ELI1, chloroplastic uncharacterized LOC100501514 pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102607016 102622905 829892 103827927 103845341 107948565 107912508 100775763 100792713 100250784 100245485 7470747 18101162 25493520 101250049 101265323 107061362 102599292 107827463 107799398 4342243 100501514 123188868 123052933 123426337 8054512 104581752
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