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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106410434   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 bna-r.1   111197893   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 bra-r.6   103827927   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 bra-r.6   103845341   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 ath-u.5   AT4G37380   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ghi-r.1   107948565   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 ghi-r.1   107945350   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 ghi-r.1   107923447   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 cit-r.1   102622905   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 cit-r.1   102607016   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 gma-u.5   100775763   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 gma-u.5   100792713   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 vvi-u.5   100250784   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 vvi-u.5   100245485   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 ppo-u.5   18101162   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 ppo-u.5   7470747   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 mtr-u.5   25493520   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 sly-u.5   101250049   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 sly-u.5   101265323   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 sot-r.1   102599292   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 sot-r.1   107061362   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 nta-r.1   107827463   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 nta-r.1   107799398   pentatricopeptide repeat-containing protein ELI1, chloroplastic-like 
 nta-r.1   107776879   putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic 
 osa-u.5   4342243   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 zma-u.5   100501514   uncharacterized LOC100501514 
 tae-r.2   123188868   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 tae-r.2   123052933   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 hvu-r.1   123426337   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 sbi-r.1   8054512   pentatricopeptide repeat-containing protein ELI1, chloroplastic 
 bdi-r.1   104581752   pentatricopeptide repeat-containing protein ELI1, chloroplastic 

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Top 50 coexpressed genes to 106410434 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106410434 (bna-r.1 coexpression data)

CoexMap"106410434"


bnaLOC106410434 | Entrez gene ID : 106410434    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 2 1 3 2 2 2 2 1 2 2 3 1 1 2 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (870 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (3493 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_013706378.2 [sequence] [blastp]
XP_048637427.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_013706378.2)
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_048637427.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_013706378.2)
chlo 8  (predict for XP_048637427.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106410434
bna-r.1
for
111197893
bra-r.6
for
103827927
bra-r.6
for
103845341
ath-u.5
for
AT4G37380
ghi-r.1
for
107948565
ghi-r.1
for
107945350
ghi-r.1
for
107923447
cit-r.1
for
102622905
cit-r.1
for
102607016
gma-u.5
for
100775763
gma-u.5
for
100792713
vvi-u.5
for
100250784
vvi-u.5
for
100245485
ppo-u.5
for
18101162
ppo-u.5
for
7470747
mtr-u.5
for
25493520
sly-u.5
for
101250049
sly-u.5
for
101265323
sot-r.1
for
102599292
sot-r.1
for
107061362
nta-r.1
for
107827463
nta-r.1
for
107799398
nta-r.1
for
107776879
osa-u.5
for
4342243
zma-u.5
for
100501514
tae-r.2
for
123188868
tae-r.2
for
123052933
hvu-r.1
for
123426337
sbi-r.1
for
8054512
bdi-r.1
for
104581752


Ortholog ID: 5566
Species bna bra bra ath ghi ghi ghi cit cit gma gma vvi vvi ppo ppo mtr sly sly sot sot nta nta nta osa zma tae tae hvu sbi bdi
Symbol LOC106410434 LOC103827927 LOC103845341 AT4G37380 LOC107948565 LOC107945350 LOC107912508 LOC102622905 LOC102607016 LOC100775763 LOC100792713 LOC100250784 LOC100245485 LOC18101162 LOC7470747 LOC25493520 LOC101250049 LOC101265323 LOC102599292 LOC107061362 LOC107827463 LOC107799398 LOC107776879 LOC4342243 LOC100501514 LOC123188868 LOC123052933 LOC123426337 LOC8054512 LOC104581752
Function* pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic-like putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic uncharacterized LOC100501514 pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic pentatricopeptide repeat-containing protein ELI1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106410434 103827927 103845341 829892 107948565 107945350 107912508 102622905 102607016 100775763 100792713 100250784 100245485 18101162 7470747 25493520 101250049 101265323 102599292 107061362 107827463 107799398 107776879 4342243 100501514 123188868 123052933 123426337 8054512 104581752
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