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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18106934   DExH-box ATP-dependent RNA helicase DExH8 
 ppo-r.4   18106934   DExH-box ATP-dependent RNA helicase DExH8 
 mtr-u.5   11416820   DExH-box ATP-dependent RNA helicase DExH8 
 ath-u.5   AT2G47680   zinc finger (CCCH type) helicase family protein 
 vvi-u.5   100250411   DExH-box ATP-dependent RNA helicase DExH8 
 sly-u.5   101257970   DExH-box ATP-dependent RNA helicase DExH8 
 osa-u.5   9270656   zinc finger CCCH domain-containing protein 4-like 
 zma-u.5   103634689   zinc finger CCCH domain-containing protein 4 

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Top 50 coexpressed genes to 18106934 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18106934 (ppo-u.5 coexpression data)

CoexMap"18106934"


ppoLOC18106934 | Entrez gene ID : 18106934    
Species ppo mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi gma
Paralog 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000462 [list] [network] maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (43 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (220 genes)  IEA  
GO:0005622 [list] [network] intracellular anatomical structure  (9366 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (2135 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_024445160.2 [sequence] [blastp]
XP_024445161.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 2,  cysk 1,  cyto_mito 1  (predict for XP_024445160.2)
chlo 6,  nucl 2,  cysk 1,  cyto_mito 1  (predict for XP_024445161.2)
Subcellular
localization
TargetP
chlo 7  (predict for XP_024445160.2)
chlo 7  (predict for XP_024445161.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18106934

.
ppo-r.4
for
18106934

.
mtr-u.5
for
11416820

.
ath-u.5
for
AT2G47680

.
vvi-u.5
for
100250411

.
sly-u.5
for
101257970

.
osa-u.5
for
9270656

.
zma-u.5
for
103634689

.


Ortholog ID: 11670
Species ath sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT2G47680 LOC101257970 LOC9270656 LOC103634689 LOC103866354 LOC100250411 LOC18106934 LOC11416820 LOC123069568 LOC123078056 LOC123443405 LOC107946074 LOC107931228 LOC106396062 LOC106450420 LOC8072421 LOC102584431 LOC102627459 LOC100837365 LOC142179342 LOC107828670
Function* zinc finger (CCCH type) helicase family protein DExH-box ATP-dependent RNA helicase DExH8 zinc finger CCCH domain-containing protein 4-like zinc finger CCCH domain-containing protein 4 DExH-box ATP-dependent RNA helicase DExH8 DExH-box ATP-dependent RNA helicase DExH8 DExH-box ATP-dependent RNA helicase DExH8 DExH-box ATP-dependent RNA helicase DExH8 zinc finger CCCH domain-containing protein 4 zinc finger CCCH domain-containing protein 4 zinc finger CCCH domain-containing protein 4 DExH-box ATP-dependent RNA helicase DExH8 DExH-box ATP-dependent RNA helicase DExH8 DExH-box ATP-dependent RNA helicase DExH8-like DExH-box ATP-dependent RNA helicase DExH8 zinc finger CCCH domain-containing protein 4 zinc finger CCCH domain-containing protein 31 DExH-box ATP-dependent RNA helicase DExH8 zinc finger CCCH domain-containing protein 4 DExH-box ATP-dependent RNA helicase DExH8-like DExH-box ATP-dependent RNA helicase DExH8
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03460 Fanconi anemia pathway 3
sly03082 ATP-dependent chromatin remodeling 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
bra03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae04626 Plant-pathogen interaction 3
tae00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 3
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
bna03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01250 Biosynthesis of nucleotide sugars 3
sbi00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819381 101257970 9270656 103634689 103866354 100250411 18106934 11416820 123069568 123078056 123443405 107946074 107931228 106396062 106450420 8072421 102584431 102627459 100837365 142179342 107828670
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