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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5  7484339  pentatricopeptide repeat-containing protein At2g34400 
 gma-u.5  100813380  pentatricopeptide repeat-containing protein At2g34400 
 gma-u.5  100786038  pentatricopeptide repeat-containing protein At2g34400 
 ath-u.5  AT2G34400  Pentatricopeptide repeat (PPR-like) superfamily protein 
 vvi-u.5  100255714  pentatricopeptide repeat-containing protein At2g34400 
 sly-u.5  101268772  pentatricopeptide repeat-containing protein At2g34400 
 osa-u.5  4338370  pentatricopeptide repeat-containing protein At2g34400 
 zma-u.5  103633526  pentatricopeptide repeat-containing protein At2g34400 

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Top 50 coexpressed genes to 7484339 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7484339 (ppo-u.5 coexpression data)

CoexMap"18108126"


ppoLOC18108126 | Entrez gene ID : 18108126
Species ppo gma ath vvi sly osa zma bdi mtr bra hvu cit bna sbi ghi sot nta cre tae
Paralog 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (384 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (6743 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_024452851.1 [sequence] [blastp]
XP_024452852.1 [sequence] [blastp]
XP_052306985.1 [sequence] [blastp]
XP_052306986.1 [sequence] [blastp]
XP_052306987.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 1,  E.R. 1,  golg 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_024452851.1)
cyto 6,  chlo 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for XP_024452852.1)
cyto 6,  chlo 1,  nucl 1  (predict for XP_052306985.1)
cyto 6,  chlo 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for XP_052306986.1)
cyto 5,  chlo 3,  nucl 1,  chlo_mito 1  (predict for XP_052306987.1)
Subcellular
localization
TargetP
other 8,  scret 3  (predict for XP_024452851.1)
other 8,  scret 3  (predict for XP_024452852.1)
other 8,  scret 3  (predict for XP_052306985.1)
other 8,  scret 3  (predict for XP_052306986.1)
other 8,  scret 3  (predict for XP_052306987.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

ppo-u.5
for
7484339


gma-u.5
for
100813380


gma-u.5
for
100786038


ath-u.5
for
AT2G34400


vvi-u.5
for
100255714


sly-u.5
for
101268772


osa-u.5
for
4338370


zma-u.5
for
103633526



Ortholog ID: 7941
Species gma gma ath bra vvi ghi ghi bna bna cit sly sot nta osa zma tae hvu sbi bdi
Symbol LOC100813380 LOC100786038 AT2G34400 LOC103865333 LOC100255714 LOC107907361 LOC107907505 LOC106432783 LOC106447500 LOC102611189 LOC101268772 LOC102600475 LOC107804099 LOC4338370 LOC103633526 LOC123180433 LOC123424787 LOC8073138 LOC100845612
Function* pentatricopeptide repeat-containing protein At2g34400 pentatricopeptide repeat-containing protein At2g34400 Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At2g34400 pentatricopeptide repeat-containing protein At2g34400 pentatricopeptide repeat-containing protein At2g34400 pentatricopeptide repeat-containing protein At2g34400 pentatricopeptide repeat-containing protein At2g34400 pentatricopeptide repeat-containing protein At2g34400-like pentatricopeptide repeat-containing protein At2g34400 pentatricopeptide repeat-containing protein At2g34400 pentatricopeptide repeat-containing protein At2g34400 pentatricopeptide repeat-containing protein At2g34400-like pentatricopeptide repeat-containing protein At2g34400 pentatricopeptide repeat-containing protein At2g34400 pentatricopeptide repeat-containing protein At2g34400 pentatricopeptide repeat-containing protein At2g34400 pentatricopeptide repeat-containing protein At2g34400 pentatricopeptide repeat-containing protein At2g34400
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100813380 100786038 818003 103865333 100255714 107907361 107907505 106432783 106447500 102611189 101268772 102600475 107804099 4338370 103633526 123180433 123424787 8073138 100845612
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