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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25484575   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 mtr-r.5   25484575   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 mtr-u.5   25500617   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 gma-u.5   100037476   granule-bound starch synthase 
 gma-u.5   GBSSIa   granule bound starch synthase Ia 
 gma-u.5   100817424   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 ppo-u.5   7491408   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 ath-u.5   GBSS1   UDP-Glycosyltransferase superfamily protein 
 bra-r.6   103874772   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 vvi-u.5   100264969   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 vvi-u.5   100243677   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 ghi-r.1   107890807   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 ghi-r.1   107929513   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 ghi-r.1   107930241   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 bna-r.1   111212542   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 bna-r.1   111211457   granule-bound starch synthase 1, chloroplastic/amyloplastic-like 
 bna-r.1   125608729   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 cit-r.1   102577951   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 cit-r.1   102625907   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 sly-u.5   GBSS1   granule-bound starch synthase 1 
 sot-r.1   GBSS   granule-bound starch synthase 
 nta-r.1   107829009   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 nta-r.1   107759522   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 osa-u.5   4343010   granule-bound starch synthase 1b, chloroplastic/amyloplastic 
 osa-u.5   4340018   granule-bound starch synthase 1, chloroplastic/amyloplastic-like 
 zma-u.5   541854   waxy 1 
 zma-u.5   100125638   granule bound starch synthase IIa precursor 
 tae-r.2   123053932   granule-bound starch synthase 1b, chloroplastic/amyloplastic 
 tae-r.2   123189823   granule-bound starch synthase 1b, chloroplastic/amyloplastic 
 tae-r.2   542837   granule-bound starch synthase 1b, chloroplastic/amyloplastic 
 hvu-r.1   123427313   granule-bound starch synthase 1b, chloroplastic/amyloplastic 
 sbi-r.1   8057926   granule-bound starch synthase 1b, chloroplastic/amyloplastic 
 bdi-r.1   100842237   granule-bound starch synthase 1b, chloroplastic/amyloplastic 
 bdi-r.1   100832486   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 cre-r.1   CHLRE_17g721500v5   uncharacterized protein 

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Top 50 coexpressed genes to 25484575 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25484575 (mtr-u.5 coexpression data)

CoexMap"25484575"


mtrLOC25484575 | Entrez gene ID : 25484575      
Species mtr gma ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 3 1 1 1 2 3 3 2 1 1 2 2 2 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG mtr00500 [list] [network] Starch and sucrose metabolism (181 genes)
GO BP
GO CC
GO MF
GO:0004373 [list] [network] alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity  (6 genes)  IEA  
Protein XP_013468877.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  chlo_mito 5,  mito 1  (predict for XP_013468877.1)
Subcellular
localization
TargetP
mito 4,  chlo 3  (predict for XP_013468877.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25484575
mtr-r.5
for
25484575
mtr-u.5
for
25500617
gma-u.5
for
100037476
gma-u.5
for
GBSSIa
gma-u.5
for
100817424
ppo-u.5
for
7491408
ath-u.5
for
GBSS1
bra-r.6
for
103874772
vvi-u.5
for
100264969
vvi-u.5
for
100243677
ghi-r.1
for
107890807
ghi-r.1
for
107929513
ghi-r.1
for
107930241
bna-r.1
for
111212542
bna-r.1
for
111211457
bna-r.1
for
125608729
cit-r.1
for
102577951
cit-r.1
for
102625907
sly-u.5
for
GBSS1
sot-r.1
for
GBSS
nta-r.1
for
107829009
nta-r.1
for
107759522
osa-u.5
for
4343010
osa-u.5
for
4340018
zma-u.5
for
541854
zma-u.5
for
100125638
tae-r.2
for
123053932
tae-r.2
for
123189823
tae-r.2
for
542837
hvu-r.1
for
123427313
sbi-r.1
for
8057926
bdi-r.1
for
100842237
bdi-r.1
for
100832486
cre-r.1
for
CHLRE_17g721500v5


Ortholog ID: 4152
Species mtr mtr gma gma gma ppo ath bra vvi vvi ghi ghi ghi bna bna bna cit cit sly sot nta nta osa osa zma zma tae tae tae hvu sbi bdi bdi cre
Symbol LOC25484575 LOC25500617 LOC100037476 LOC100817424 LOC100787590 LOC7491408 GBSS1 LOC103874772 LOC100264969 LOC100243677 LOC107890807 LOC107930241 LOC107911823 LOC111212542 LOC111211457 LOC125608729 LOC102577951 LOC102625907 GBSS1 GBSS LOC107829009 LOC107759522 LOC4343010 LOC4340018 LOC541854 LOC100125638 LOC123053932 LOC123189823 LOC542837 LOC123427313 LOC8057926 LOC100842237 LOC100832486 CHLRE_17g721500v5
Function* granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic UDP-Glycosyltransferase superfamily protein granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic-like granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic-like granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1 granule-bound starch synthase granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1b, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic-like waxy 1 granule bound starch synthase IIa precursor granule-bound starch synthase 1b, chloroplastic/amyloplastic granule-bound starch synthase 1b, chloroplastic/amyloplastic granule-bound starch synthase 1b, chloroplastic/amyloplastic granule-bound starch synthase 1b, chloroplastic/amyloplastic granule-bound starch synthase 1b, chloroplastic/amyloplastic granule-bound starch synthase 1b, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
mtr04075 Plant hormone signal transduction 3
mtr00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 6
gma00520 Amino sugar and nucleotide sugar metabolism 3
gma01250 Biosynthesis of nucleotide sugars 3
gma00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 4
gma00380 Tryptophan metabolism 2
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 7
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 3
ath00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 6
vvi00630 Glyoxylate and dicarboxylate metabolism 5
vvi04146 Peroxisome 4
vvi00260 Glycine, serine and threonine metabolism 3
vvi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 6
ghi00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 3
bna00900 Terpenoid backbone biosynthesis 2
bna00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 3
bna00900 Terpenoid backbone biosynthesis 2
bna00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 3
bna00900 Terpenoid backbone biosynthesis 2
bna00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 8
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 8
cit04145 Phagosome 3
cit04517 IgSF CAM signaling 3
cit04814 Motor proteins 3
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 10
sly00710 Carbon fixation by Calvin cycle 6
sly00030 Pentose phosphate pathway 5
sly00010 Glycolysis / Gluconeogenesis 4
sly01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 8
sot00620 Pyruvate metabolism 3
sot00710 Carbon fixation by Calvin cycle 3
sot01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 6
nta00906 Carotenoid biosynthesis 3
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 6
nta00906 Carotenoid biosynthesis 3
nta00905 Brassinosteroid biosynthesis 2
nta00561 Glycerolipid metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 12
osa00520 Amino sugar and nucleotide sugar metabolism 3
osa01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00630 Glyoxylate and dicarboxylate metabolism 2
osa01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
zma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 8
zma00562 Inositol phosphate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 6
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 6
tae00520 Amino sugar and nucleotide sugar metabolism 4
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 6
tae00520 Amino sugar and nucleotide sugar metabolism 4
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 11
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 25484575 25500617 100037476 100817424 100787590 7491408 840184 103874772 100264969 100243677 107890807 107930241 107911823 111212542 111211457 125608729 102577951 102625907 101259777 102577459 107829009 107759522 4343010 4340018 541854 100125638 123053932 123189823 542837 123427313 8057926 100842237 100832486 5722695
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