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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   542837   granule-bound starch synthase 1b, chloroplastic/amyloplastic 
 osa-u.5   4340018   granule-bound starch synthase 1, chloroplastic/amyloplastic-like 
 osa-u.5   4343010   granule-bound starch synthase 1b, chloroplastic/amyloplastic 
 zma-u.5   541854   waxy 1 
 zma-u.5   100125638   granule bound starch synthase IIa precursor 
 ath-u.5   GBSS1   UDP-Glycosyltransferase superfamily protein 
 gma-u.5   100037476   granule-bound starch synthase 
 gma-u.5   GBSSIa   granule bound starch synthase Ia 
 gma-u.5   100787590   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 sly-u.5   GBSS1   granule-bound starch synthase 1 
 vvi-u.5   100243677   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 vvi-u.5   100264969   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 ppo-u.5   7491408   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 mtr-u.5   25500617   granule-bound starch synthase 1, chloroplastic/amyloplastic 
 mtr-u.5   25484575   granule-bound starch synthase 1, chloroplastic/amyloplastic 

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Top 50 coexpressed genes to 542837 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542837 (tae-r.2 coexpression data)

CoexMap"542837"


taeLOC542837 | Entrez gene ID : 542837    
Species tae osa zma ath gma sly vvi ppo mtr hvu cit bra ghi sbi bdi nta bna cre sot
Paralog 1 2 2 1 3 1 2 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes00500 [list] [network] Starch and sucrose metabolism (558 genes)
GO BP
GO CC
GO MF
GO:0004373 [list] [network] alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity  (27 genes)  IEA  
Protein XP_044325269.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  cyto 1  (predict for XP_044325269.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_044325269.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
542837
osa-u.5
for
4340018
osa-u.5
for
4343010
zma-u.5
for
541854
zma-u.5
for
100125638
ath-u.5
for
GBSS1
gma-u.5
for
100037476
gma-u.5
for
GBSSIa
gma-u.5
for
100787590
sly-u.5
for
GBSS1
vvi-u.5
for
100243677
vvi-u.5
for
100264969
ppo-u.5
for
7491408
mtr-u.5
for
25500617
mtr-u.5
for
25484575


Ortholog ID: 4152
Species tae tae hvu bdi osa osa zma zma sbi ath gma gma sly bra vvi vvi ppo mtr mtr ghi ghi bna bna sot cit cit nta nta cre
Symbol LOC123189823 LOC123053932 LOC123427313 LOC100832486 LOC4340018 LOC4343010 LOC541854 LOC100125638 LOC8057926 GBSS1 LOC100817424 LOC100037476 GBSS1 LOC103874772 LOC100264969 LOC100243677 LOC7491408 LOC25484575 LOC25500617 LOC107890807 LOC107930241 LOC125608729 LOC111211457 GBSS LOC102577951 LOC102625907 LOC107829009 LOC107759522 CHLRE_17g721500v5
Function* granule-bound starch synthase 1b, chloroplastic/amyloplastic granule-bound starch synthase 1b, chloroplastic/amyloplastic granule-bound starch synthase 1b, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic-like granule-bound starch synthase 1b, chloroplastic/amyloplastic waxy 1 granule bound starch synthase IIa precursor granule-bound starch synthase 1b, chloroplastic/amyloplastic UDP-Glycosyltransferase superfamily protein granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase granule-bound starch synthase 1 granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic-like granule-bound starch synthase granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 1, chloroplastic/amyloplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 6
tae00520 Amino sugar and nucleotide sugar metabolism 4
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 6
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00630 Glyoxylate and dicarboxylate metabolism 2
osa01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 12
osa00520 Amino sugar and nucleotide sugar metabolism 3
osa01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
zma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 8
zma00562 Inositol phosphate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 11
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 3
ath00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 4
gma00380 Tryptophan metabolism 2
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 6
gma00520 Amino sugar and nucleotide sugar metabolism 3
gma01250 Biosynthesis of nucleotide sugars 3
gma00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 10
sly00710 Carbon fixation by Calvin cycle 6
sly00030 Pentose phosphate pathway 5
sly00010 Glycolysis / Gluconeogenesis 4
sly01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 6
vvi00630 Glyoxylate and dicarboxylate metabolism 5
vvi04146 Peroxisome 4
vvi00260 Glycine, serine and threonine metabolism 3
vvi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
mtr04075 Plant hormone signal transduction 3
mtr00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 6
ghi00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 3
bna00900 Terpenoid backbone biosynthesis 2
bna00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 3
bna00900 Terpenoid backbone biosynthesis 2
bna00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 8
sot00620 Pyruvate metabolism 3
sot00710 Carbon fixation by Calvin cycle 3
sot01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 8
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 8
cit04145 Phagosome 3
cit04517 IgSF CAM signaling 3
cit04814 Motor proteins 3
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 6
nta00906 Carotenoid biosynthesis 3
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 6
nta00906 Carotenoid biosynthesis 3
nta00905 Brassinosteroid biosynthesis 2
nta00561 Glycerolipid metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123189823 123053932 123427313 100832486 4340018 4343010 541854 100125638 8057926 840184 100817424 100037476 101259777 103874772 100264969 100243677 7491408 25484575 25500617 107890807 107930241 125608729 111211457 102577459 102577951 102625907 107829009 107759522 5722695
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