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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25491831   protein LOW PSII ACCUMULATION 2, chloroplastic 
 mtr-r.5   25491831   protein LOW PSII ACCUMULATION 2, chloroplastic 
 gma-u.5   100777895   uncharacterized LOC100777895 
 ppo-u.5   7476755   protein LPA2 
 ath-u.5   LPA2   low psii accumulation2 
 bra-r.6   103857177   protein LOW PSII ACCUMULATION 2, chloroplastic 
 vvi-u.5   100261162   protein LPA2 
 ghi-r.1   107933132   protein LOW PSII ACCUMULATION 2, chloroplastic 
 ghi-r.1   107953667   protein LOW PSII ACCUMULATION 2, chloroplastic 
 bna-r.1   106345887   protein LPA2 
 bna-r.1   106387933   protein LPA2 
 cit-r.1   102619762   protein LPA2 
 sly-u.5   101250094   protein LPA2 
 sot-r.1   102583711   protein LOW PSII ACCUMULATION 2, chloroplastic 
 nta-r.1   107815532   protein LPA2 
 nta-r.1   107811987   protein LPA2-like 
 osa-u.5   4328146   protein LPA2 
 zma-u.5   100278883   Protein LOW PSII ACCUMULATION 2 chloroplastic 
 tae-r.2   123131960   protein LPA2 
 tae-r.2   123135981   protein LPA2 
 tae-r.2   123143479   protein LPA2 
 hvu-r.1   123401850   protein LPA2 
 sbi-r.1   8061363   protein LOW PSII ACCUMULATION 2, chloroplastic 
 sbi-r.1   8068278   protein LOW PSII ACCUMULATION 2, chloroplastic 
 bdi-r.1   100826673   protein LOW PSII ACCUMULATION 2, chloroplastic 
 cre-r.1   CHLRE_02g105650v5   uncharacterized protein 

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Top 50 coexpressed genes to 25491831 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25491831 (mtr-u.5 coexpression data)

CoexMap"25491831"


mtrLOC25491831 | Entrez gene ID : 25491831      
Species mtr gma ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 1 1 1 2 2 1 1 1 2 1 1 3 1 2 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (642 genes)  IEA  
GO MF
Protein XP_013455324.2 [sequence] [blastp]
Subcellular
localization
wolf
plas 4,  chlo 3,  extr 1,  vacu 1,  chlo_mito 1  (predict for XP_013455324.2)
Subcellular
localization
TargetP
chlo 6  (predict for XP_013455324.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25491831
mtr-r.5
for
25491831
gma-u.5
for
100777895
ppo-u.5
for
7476755
ath-u.5
for
LPA2
bra-r.6
for
103857177
vvi-u.5
for
100261162
ghi-r.1
for
107933132
ghi-r.1
for
107953667
bna-r.1
for
106345887
bna-r.1
for
106387933
cit-r.1
for
102619762
sly-u.5
for
101250094
sot-r.1
for
102583711
nta-r.1
for
107815532
nta-r.1
for
107811987
osa-u.5
for
4328146
zma-u.5
for
100278883
tae-r.2
for
123131960
tae-r.2
for
123135981
tae-r.2
for
123143479
hvu-r.1
for
123401850
sbi-r.1
for
8061363
sbi-r.1
for
8068278
bdi-r.1
for
100826673
cre-r.1
for
CHLRE_02g105650v5


Ortholog ID: 10567
Species mtr gma ppo ath bra vvi ghi ghi bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi sbi bdi cre
Symbol LOC25491831 LOC100777895 LOC7476755 LPA2 LOC103857177 LOC100261162 LOC107933132 LOC107953667 LOC106345887 LOC106387933 LOC102619762 LOC101250094 LOC102583711 LOC107815532 LOC107811987 LOC4328146 LOC100278883 LOC123131960 LOC123135981 LOC123143479 LOC123401850 LOC8061363 LOC8068278 LOC100826673 CHLRE_02g105650v5
Function* protein LOW PSII ACCUMULATION 2, chloroplastic uncharacterized LOC100777895 protein LPA2 low psii accumulation2 protein LOW PSII ACCUMULATION 2, chloroplastic protein LPA2 protein LOW PSII ACCUMULATION 2, chloroplastic protein LOW PSII ACCUMULATION 2, chloroplastic protein LPA2 protein LPA2 protein LPA2 protein LPA2 protein LOW PSII ACCUMULATION 2, chloroplastic protein LPA2 protein LPA2-like protein LPA2 Protein LOW PSII ACCUMULATION 2 chloroplastic protein LPA2 protein LPA2 protein LPA2 protein LPA2 protein LOW PSII ACCUMULATION 2, chloroplastic protein LOW PSII ACCUMULATION 2, chloroplastic protein LOW PSII ACCUMULATION 2, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01200 Carbon metabolism 4
bna01230 Biosynthesis of amino acids 4
bna00030 Pentose phosphate pathway 2
bna00040 Pentose and glucuronate interconversions 2
bna00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01200 Carbon metabolism 4
bna01230 Biosynthesis of amino acids 4
bna00030 Pentose phosphate pathway 2
bna00040 Pentose and glucuronate interconversions 2
bna00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 6
tae00010 Glycolysis / Gluconeogenesis 3
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00860 Porphyrin metabolism 5
cre01240 Biosynthesis of cofactors 4
cre03060 Protein export 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 25491831 100777895 7476755 3771487 103857177 100261162 107933132 107953667 106345887 106387933 102619762 101250094 102583711 107815532 107811987 4328146 100278883 123131960 123135981 123143479 123401850 8061363 8068278 100826673 5725305
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