ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	25492388	TATA box-binding protein-associated factor RNA polymerase I subunit B
mtr-r.5	25492388	TATA box-binding protein-associated factor RNA polymerase I subunit B
mtr-u.5	11437670	TATA box-binding protein-associated factor RNA polymerase I subunit B
mtr-u.5	11419712	TATA box-binding protein-associated factor RNA polymerase I subunit B
gma-u.5	100789168	TATA box-binding protein-associated factor RNA polymerase I subunit B
ppo-u.5	7492940	TATA box-binding protein-associated factor RNA polymerase I subunit B
ath-u.5	MEE12	maternal effect embryo arrest 12
bra-r.6	103843672	TATA box-binding protein-associated factor RNA polymerase I subunit B
vvi-u.5	100241425	TATA box-binding protein-associated factor RNA polymerase I subunit B
ghi-r.1	107904070	TATA box-binding protein-associated factor RNA polymerase I subunit B
bna-r.1	106369255	TATA box-binding protein-associated factor RNA polymerase I subunit B
cit-r.1	102617299	TATA box-binding protein-associated factor RNA polymerase I subunit B
sly-u.5	101254759	TATA box-binding protein-associated factor RNA polymerase I subunit B
sly-u.5	101263451	TATA box-binding protein-associated factor RNA polymerase I subunit B
sot-r.1	102596822	TATA box-binding protein-associated factor RNA polymerase I subunit B
nta-r.1	107774568	TATA box-binding protein-associated factor RNA polymerase I subunit B
nta-r.1	107803844	TATA box-binding protein-associated factor RNA polymerase I subunit B-like
osa-u.5	4338505	TATA box-binding protein-associated factor RNA polymerase I subunit B
zma-u.5	100501385	uncharacterized LOC100501385
tae-r.2	123128970	TATA box-binding protein-associated factor RNA polymerase I subunit B
tae-r.2	123052651	TATA box-binding protein-associated factor RNA polymerase I subunit B
hvu-r.1	123441159	TATA box-binding protein-associated factor RNA polymerase I subunit B-like
sbi-r.1	8065815	TATA box-binding protein-associated factor RNA polymerase I subunit B
sbi-r.1	8083747	TATA box-binding protein-associated factor RNA polymerase I subunit B
bdi-r.1	100826720	TATA box-binding protein-associated factor RNA polymerase I subunit B

Annotation

functional annotation

KEGG

GO BP

GO:0001188 [list] [network] RNA polymerase I preinitiation complex assembly	(3 genes)	IEA
GO:0042790 [list] [network] nucleolar large rRNA transcription by RNA polymerase I	(15 genes)	IEA

GO CC

GO:0070860 [list] [network] RNA polymerase I core factor complex

(3 genes)

IEA

GO MF

GO:0001164 [list] [network] RNA polymerase I core promoter sequence-specific DNA binding

(4 genes)

IEA

Protein

XP_013455943.2 [sequence] [blastp]
XP_024638479.2 [sequence] [blastp]
XP_039689399.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, nucl 3	(predict for XP_013455943.2)
plas 6, nucl 3	(predict for XP_024638479.2)
plas 6, nucl 3	(predict for XP_039689399.1)

Subcellular
localization
TargetP

other 8, scret 3	(predict for XP_013455943.2)
other 8, scret 3	(predict for XP_024638479.2)
other 8, scret 3	(predict for XP_039689399.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 25492388	mtr-r.5 for 25492388	mtr-u.5 for 11437670	mtr-u.5 for 11419712	gma-u.5 for 100789168	ppo-u.5 for 7492940	ath-u.5 for MEE12	bra-r.6 for 103843672	vvi-u.5 for 100241425	ghi-r.1 for 107904070	bna-r.1 for 106369255	cit-r.1 for 102617299	sly-u.5 for 101254759	sly-u.5 for 101263451	sot-r.1 for 102596822	nta-r.1 for 107774568	nta-r.1 for 107803844	osa-u.5 for 4338505	zma-u.5 for 100501385	tae-r.2 for 123128970	tae-r.2 for 123052651	hvu-r.1 for 123441159	sbi-r.1 for 8065815	sbi-r.1 for 8083747	bdi-r.1 for 100826720

Ortholog

Ortholog ID: 6797

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

MEE12

Function^*