ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	25494210	factor of DNA methylation 1
mtr-r.5	25494210	factor of DNA methylation 1
mtr-u.5	11440090	factor of DNA methylation 1
gma-u.5	100790829	factor of DNA methylation 1
gma-u.5	100798940	factor of DNA methylation 1
gma-u.5	102665742	kinesin-like protein KIF20B
ppo-u.5	7478299	factor of DNA methylation 1
ppo-u.5	18102687	factor of DNA methylation 4
ath-u.5	IDN2	XH/XS domain-containing protein
ath-u.5	FDM2	XH/XS domain-containing protein
bra-r.6	103830457	factor of DNA methylation 5
bra-r.6	103842874	factor of DNA methylation 1-like
bra-r.6	103872390	factor of DNA methylation 1
vvi-u.5	100260350	protein INVOLVED IN DE NOVO 2
vvi-u.5	100257549	factor of DNA methylation 1
vvi-u.5	100252420	factor of DNA methylation 1
ghi-r.1	107900468	protein INVOLVED IN DE NOVO 2
ghi-r.1	107900469	protein INVOLVED IN DE NOVO 2
ghi-r.1	107906427	factor of DNA methylation 1
bna-r.1	125575041	protein INVOLVED IN DE NOVO 2-like
bna-r.1	125591286	factor of DNA methylation 1-like
bna-r.1	111198617	protein INVOLVED IN DE NOVO 2-like
cit-r.1	102624060	protein INVOLVED IN DE NOVO 2
cit-r.1	102629124	factor of DNA methylation 1
cit-r.1	102629537	protein INVOLVED IN DE NOVO 2-like
sly-u.5	101256002	protein INVOLVED IN DE NOVO 2
sly-u.5	101244470	factor of DNA methylation 1
sot-r.1	102598897	factor of DNA methylation 1-like
sot-r.1	102599221	factor of DNA methylation 1-like
sot-r.1	102585012	protein INVOLVED IN DE NOVO 2
nta-r.1	107774607	factor of DNA methylation 1
nta-r.1	107807185	factor of DNA methylation 1-like
nta-r.1	107818442	factor of DNA methylation 1-like
osa-u.5	4329065	factor of DNA methylation 1
osa-u.5	4326595	protein INVOLVED IN DE NOVO 2
osa-u.5	4325982	protein INVOLVED IN DE NOVO 2
zma-u.5	100279850	uncharacterized LOC100279850
zma-u.5	100382110	putative XH domain family protein
zma-u.5	100383007	putative XH domain family protein
tae-r.2	123149525	protein INVOLVED IN DE NOVO 2
tae-r.2	123078565	factor of DNA methylation 1
tae-r.2	123110588	factor of DNA methylation 1
hvu-r.1	123443902	factor of DNA methylation 1-like
hvu-r.1	123443878	factor of DNA methylation 1-like
hvu-r.1	123412222	factor of DNA methylation 1-like
sbi-r.1	8058200	protein INVOLVED IN DE NOVO 2
sbi-r.1	8070401	factor of DNA methylation 1
bdi-r.1	100845608	factor of DNA methylation 1
bdi-r.1	100845391	factor of DNA methylation 1
bdi-r.1	100844455	factor of DNA methylation 1

Top 50 coexpressed genes to 25494210 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 25494210 (mtr-u.5 coexpression data)

CoexMap"25494210"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0080188 [list] [network] gene silencing by siRNA-directed DNA methylation

(33 genes)

IEA

GO CC

GO MF

Protein

XP_013458455.2 [sequence] [blastp]
XP_039689783.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto 1	(predict for XP_013458455.2)
nucl 8, cyto 1	(predict for XP_039689783.1)

Subcellular
localization
TargetP

other 9	(predict for XP_013458455.2)
other 9	(predict for XP_039689783.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 25494210	mtr-r.5 for 25494210	mtr-u.5 for 11440090	gma-u.5 for 100790829	gma-u.5 for 100798940	gma-u.5 for 102665742	ppo-u.5 for 7478299	ppo-u.5 for 18102687	ath-u.5 for IDN2	ath-u.5 for FDM2	bra-r.6 for 103830457	bra-r.6 for 103842874	bra-r.6 for 103872390	vvi-u.5 for 100260350	vvi-u.5 for 100257549	vvi-u.5 for 100252420	ghi-r.1 for 107900468	ghi-r.1 for 107900469	ghi-r.1 for 107906427	bna-r.1 for 125575041	bna-r.1 for 125591286	bna-r.1 for 111198617	cit-r.1 for 102624060	cit-r.1 for 102629124	cit-r.1 for 102629537	sly-u.5 for 101256002	sly-u.5 for 101244470	sot-r.1 for 102598897	sot-r.1 for 102599221	sot-r.1 for 102585012	nta-r.1 for 107774607	nta-r.1 for 107807185	nta-r.1 for 107818442	osa-u.5 for 4329065	osa-u.5 for 4326595	osa-u.5 for 4325982	zma-u.5 for 100279850	zma-u.5 for 100382110	zma-u.5 for 100383007	tae-r.2 for 123149525	tae-r.2 for 123078565	tae-r.2 for 123110588	hvu-r.1 for 123443902	hvu-r.1 for 123443878	hvu-r.1 for 123412222	sbi-r.1 for 8058200	sbi-r.1 for 8070401	bdi-r.1 for 100845608	bdi-r.1 for 100845391	bdi-r.1 for 100844455

Ortholog

Ortholog ID: 752

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

FDM2

FDM1

FDM5

Function^*

factor of DNA methylation 4

factor of DNA methylation 1

kinesin-like protein KIF20B

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 1

factor of DNA methylation 4

protein INVOLVED IN DE NOVO 2

XH/XS domain-containing protein

factor of DNA methylation 1-like

factor of DNA methylation 1

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 1

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 4

factor of DNA methylation 1

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 1-like

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 1

factor of DNA methylation 4

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 1

factor of DNA methylation 1-like

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 1

factor of DNA methylation 4

factor of DNA methylation 1

protein INVOLVED IN DE NOVO 2

uncharacterized LOC100279850

putative XH domain family protein

factor of DNA methylation 1

factor of DNA methylation 1-like

protein INVOLVED IN DE NOVO 2-like

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	5
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03440	Homologous recombination	2
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00380	Tryptophan metabolism	2
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00620	Pyruvate metabolism	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	6
nta00010	Glycolysis / Gluconeogenesis	2
nta00030	Pentose phosphate pathway	2
nta00052	Galactose metabolism	2
nta00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	3
osa03008	Ribosome biogenesis in eukaryotes	2
osa03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	4
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03020	RNA polymerase	2
hvu03030	DNA replication	2
hvu03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	3
bdi00020	Citrate cycle (TCA cycle)	2

Expression

Expression pattern

Entrez Gene ID^*

25487893

11425283

100790829

102665742

100812353

7478299

18102687

7458138

828016

838161

844418

103842874

103872390

103873124

100257549

100252420

100244410

107900468

107900469

107942441

106414893

106430807

106346801

102624060

102629124

102620954

101256002

101244470

102598897

102599221

102585012

107774607

107806269

107818569

4329065

4326595

4325982

100279850

100382110

100383007

123091502

123061513

123443902

123443878

123413430

8058200

8070401

100845608

100845391

100821394

The preparation time of this page was 0.1 [sec].


Species	mtr	gma	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	2	2	3	3	3	3	3	2	3	3	3	3	3	3	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 25494210 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25494210 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**