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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   ycf2   Ycf2 
 ath-u.5   ycf2   Ycf2 
 ath-u.5   ycf2   Ycf2 
 gma-u.5   ycf2   Ycf2 
 gma-u.5   ycf2   Ycf2 
 vvi-u.5   ycf2   Ycf2 
 vvi-u.5   ycf2   Ycf2 
 ppo-u.5   ycf2   Ycf2 
 ppo-u.5   ycf2   Ycf2 
 mtr-u.5   ycf2   hypothetical chloroplast RF2 
 mtr-u.5   11444658   protein Ycf2 
 mtr-u.5   25480042   protein Ycf2 
 sly-u.5   ycf2   hypothetical chloroplast RF2 
 sly-u.5   ycf2   hypothetical chloroplast RF2 

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Top 50 coexpressed genes to ycf2 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ycf2 (ghi-r.1 coexpression data)

CoexMap"3989222"


ghiycf2 | Entrez gene ID : 3989222    
Species ghi ath gma vvi ppo mtr sly hvu zma bna cit bra osa sbi bdi nta tae cre sot
Paralog 1 2 2 2 2 3 2 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein YP_538997.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  nucl 2,  cyto 1,  mito 1,  golg 1  (predict for YP_538997.1)
Subcellular
localization
TargetP
other 7  (predict for YP_538997.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
ycf2
ath-u.5
for
ycf2
ath-u.5
for
ycf2
gma-u.5
for
ycf2
gma-u.5
for
ycf2
vvi-u.5
for
ycf2
vvi-u.5
for
ycf2
ppo-u.5
for
ycf2
ppo-u.5
for
ycf2
mtr-u.5
for
ycf2
mtr-u.5
for
11444658
mtr-u.5
for
25480042
sly-u.5
for
ycf2
sly-u.5
for
ycf2


Ortholog ID: 837
Species ghi ath ath bra bra bna cit cit gma gma ppo mtr mtr sly sly sot sot nta nta
Symbol LOC121212549 ycf2 ycf2 LOC117129786 LOC117129787 LOC125600258 ycf2 ycf2 ycf2 ycf2 ycf2 LOC120579888 LOC25480042 ycf2 ycf2 ycf2 ycf2 LOC142169795 ycf2
Function* protein Ycf2-like Ycf2 Ycf2 protein Ycf2 protein Ycf2 protein Ycf2-like Ycf2 Ycf2 Ycf2 Ycf2 Ycf2 protein Ycf2 protein Ycf2 hypothetical chloroplast RF2 hypothetical chloroplast RF2 Ycf2 Ycf2 protein Ycf2-like Ycf2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
ath03020 RNA polymerase 3
ath00195 Photosynthesis 2
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
ath03020 RNA polymerase 3
ath00195 Photosynthesis 2
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 3
bra00195 Photosynthesis 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 3
bra00195 Photosynthesis 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
bna03020 RNA polymerase 3
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 6
gma03020 RNA polymerase 4
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 6
gma03020 RNA polymerase 2
gma00195 Photosynthesis 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 9
ppo03020 RNA polymerase 4
ppo03010 Ribosome 3
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 5
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 4
sly03020 RNA polymerase 3
sly00190 Oxidative phosphorylation 3
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03020 RNA polymerase 4
sly03010 Ribosome 4
sly00190 Oxidative phosphorylation 3
sly00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 7
sot00190 Oxidative phosphorylation 3
sot03020 RNA polymerase 3
sot00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot00190 Oxidative phosphorylation 4
sot00195 Photosynthesis 3
sot03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 11
nta00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 4
nta03010 Ribosome 3
nta00195 Photosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121212549 1466248 844715 117129786 117129787 125600258 4271165 4271167 3989252 3989340 4929717 120579888 25480042 3950378 3950481 4099888 4099925 142169795 800485
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