ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	petA	apocytochrome f precursor
gma-r.7	petA	apocytochrome f precursor
gma-u.5	121173225	cytochrome f-like
mtr-u.5	120580171	cytochrome f
mtr-u.5	120580077	cytochrome f
mtr-u.5	petA	cytochrome f
ppo-u.5	petA	cytochrome f
ath-u.5	petA	cytochrome f
vvi-u.5	petA	cytochrome f
vvi-u.5	petA	apocytochrome f precursor
ghi-r.1	petA	apocytochrome f precursor
cit-r.1	petA	cytochrome f
sly-u.5	petA	cytochrome f
sot-r.1	petA	cytochrome f
nta-r.1	petA	apocytochrome f precursor
osa-u.5	petA	cytochrome f
zma-u.5	118474823	cytochrome f
sbi-r.1	petA	cytochrome f
bdi-r.1	petA	cytochrome f

Annotation

functional annotation

KEGG

gmx00195 [list] [network] Photosynthesis (116 genes)

GO BP

GO CC

GO MF

Protein

YP_538777.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, plas 1, extr 1, golg 1, golg_plas 1

(predict for YP_538777.1)

Subcellular
localization
TargetP

other 4

(predict for YP_538777.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for petA	gma-r.7 for petA	gma-u.5 for 121173225	mtr-u.5 for 120580171	mtr-u.5 for 120580077	mtr-u.5 for petA	ppo-u.5 for petA	ath-u.5 for petA	vvi-u.5 for petA	vvi-u.5 for petA	ghi-r.1 for petA	cit-r.1 for petA	sly-u.5 for petA	sot-r.1 for petA	nta-r.1 for petA	osa-u.5 for petA	zma-u.5 for 118474823	sbi-r.1 for petA	bdi-r.1 for petA

Ortholog

Ortholog ID: 7101

Species

gma

mtr

ppo

ath

vvi

ghi

cit

sly

sot

nta

osa

zma

sbi

bdi

Symbol

petA

petA

petA

Function^*

apocytochrome f precursor

cytochrome f-like

cytochrome f

apocytochrome f precursor

cytochrome f

apocytochrome f precursor

cytochrome f

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	5
gma00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	5
gma00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00195	Photosynthesis	11
mtr00190	Oxidative phosphorylation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00195	Photosynthesis	13
mtr00190	Oxidative phosphorylation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	12
mtr00195	Photosynthesis	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	7
ppo03020	RNA polymerase	5
ppo00195	Photosynthesis	3
ppo00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00195	Photosynthesis	11
ath00190	Oxidative phosphorylation	4
ath00970	Aminoacyl-tRNA biosynthesis	3
ath01200	Carbon metabolism	2
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	7
vvi00195	Photosynthesis	6
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	7
vvi00195	Photosynthesis	6
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01200	Carbon metabolism	6
ghi00061	Fatty acid biosynthesis	3
ghi00620	Pyruvate metabolism	3
ghi00640	Propanoate metabolism	3
ghi01212	Fatty acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00195	Photosynthesis	9
cit00190	Oxidative phosphorylation	5
cit01200	Carbon metabolism	3
cit03020	RNA polymerase	2
cit00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00195	Photosynthesis	11
sly00190	Oxidative phosphorylation	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00195	Photosynthesis	13
sot00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00195	Photosynthesis	8
nta00190	Oxidative phosphorylation	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00195	Photosynthesis	10
osa00190	Oxidative phosphorylation	4
osa03020	RNA polymerase	3
osa00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00195	Photosynthesis	9
zma00630	Glyoxylate and dicarboxylate metabolism	3
zma00710	Carbon fixation by Calvin cycle	3
zma01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	7
sbi00195	Photosynthesis	6
sbi00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00195	Photosynthesis	11
bdi00190	Oxidative phosphorylation	5

Expression

Expression pattern

Entrez Gene ID^*

3989309

121173225

120580171

120580077

5333092

4929683

844748

7498572

4025050

3989162

4271218

3950466

4099990

800461

3131402

118474823

4549172

6439865

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to petA (gma-u.5 coexpression data)

Top 50 enrichment test to petA (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	vvi	ghi	cit	sly	sot	nta	osa	zma	sbi	bdi	bra	cre	tae	bna	hvu
Paralog	3	3	1	1	2	1	1	1	1	1	1	1	1	1	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to petA (gma-u.5 coexpression data)

Top 50 enrichment test to petA (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**