ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	4325788	homeobox protein knotted-1-like 1
osa-r.6	4325788	homeobox protein knotted-1-like 1
osa-m.8	4325788	homeobox protein knotted-1-like 1
osa-e.1	4325788	homeobox protein knotted-1-like 1
osa-u.5	4342320	homeobox protein knotted-1-like 12
tae-r.2	123090945	homeobox protein KNOX3
hvu-r.1	123447644	homeobox protein KNOX3
bdi-r.1	100821336	homeobox protein knotted-1-like 12
bdi-r.1	100830103	homeobox protein knotted-1-like 1
bdi-r.1	100832589	homeobox protein rough sheath 1
zma-u.5	100193050	uncharacterized LOC100193050
zma-u.5	100283504	KNOX1 domain containing protein
zma-u.5	100283277	homeobox protein rough sheath 1
sbi-r.1	8060322	homeobox protein knotted-1-like 1
sbi-r.1	8084184	homeobox protein rough sheath 1
sbi-r.1	8071273	homeobox protein knotted-1-like 10
ath-u.5	KNAT6	homeobox protein knotted-1-like 6
ath-u.5	KNAT1	homeobox knotted-like protein
ath-u.5	KNAT2	homeobox knotted-like protein
gma-u.5	100803095	homeobox protein knotted-1-like
gma-u.5	100803730	homeobox protein knotted-1-like 6
sly-u.5	KN4	knotted homeodomain protein 4
sly-u.5	KN1	homeotic protein knotted-1
sly-u.5	TKn3	knotted 3 protein
bra-r.6	103858468	homeobox protein knotted-1-like 1
bra-r.6	103852657	homeobox protein knotted-1-like 2
bra-r.6	STM	homeobox protein SHOOT MERISTEMLESS
vvi-u.5	100267474	homeobox protein SBH1
vvi-u.5	100264808	homeobox protein knotted-1-like 1
ppo-u.5	7478899	homeobox protein knotted-1-like 1
ppo-u.5	7467239	homeobox protein knotted-1-like 2
ppo-u.5	7463625	homeobox protein SBH1
mtr-u.5	25482021	homeotic protein knotted-1
mtr-u.5	11406488	homeobox protein knotted-1-like 1
mtr-u.5	11415594	homeobox protein knotted-1-like 6
ghi-r.1	107935395	homeobox protein SBH1
ghi-r.1	107933765	homeobox protein knotted-1-like 1
ghi-r.1	107930537	homeobox protein knotted-1-like 2
bna-r.1	106414253	homeobox protein knotted-1-like 6
bna-r.1	106420956	homeobox protein knotted-1-like 6
bna-r.1	106434220	homeobox protein knotted-1-like 6
sot-r.1	POTH15	homeobox protein knotted-1-like LET6-like
sot-r.1	102579398	homeobox protein knotted-1-like 1-like
sot-r.1	102577616	POTH1
cit-r.1	102615394	homeotic protein knotted-1
cit-r.1	102628261	homeobox protein knotted-1-like 6
nta-r.1	107780680	homeobox protein knotted-1-like 6
nta-r.1	107826559	homeobox protein knotted-1-like LET6

Top 50 coexpressed genes to 4325788 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4325788 (osa-u.5 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

homeobox protein knotted-1-like 1

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(380 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(3003 genes)

IEA

GO MF

GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding	(221 genes)	IEA
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(257 genes)	IEA

Protein

NP_001388421.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for NP_001388421.1)

Subcellular
localization
TargetP

other 8

(predict for NP_001388421.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4325788	osa-r.6 for 4325788	osa-m.8 for 4325788	osa-e.1 for 4325788	osa-u.5 for 4342320	tae-r.2 for 123090945	hvu-r.1 for 123447644	bdi-r.1 for 100821336	bdi-r.1 for 100830103	bdi-r.1 for 100832589	zma-u.5 for 100193050	zma-u.5 for 100283504	zma-u.5 for 100283277	sbi-r.1 for 8060322	sbi-r.1 for 8084184	sbi-r.1 for 8071273	ath-u.5 for KNAT6	ath-u.5 for KNAT1	ath-u.5 for KNAT2	gma-u.5 for 100803095	gma-u.5 for 100803730	sly-u.5 for KN4	sly-u.5 for KN1	sly-u.5 for TKn3	bra-r.6 for 103858468	bra-r.6 for 103852657	bra-r.6 for STM	vvi-u.5 for 100267474	vvi-u.5 for 100264808	ppo-u.5 for 7478899	ppo-u.5 for 7467239	ppo-u.5 for 7463625	mtr-u.5 for 25482021	mtr-u.5 for 11406488	mtr-u.5 for 11415594	ghi-r.1 for 107935395	ghi-r.1 for 107933765	ghi-r.1 for 107930537	bna-r.1 for 106414253	bna-r.1 for 106420956	bna-r.1 for 106434220	sot-r.1 for POTH15	sot-r.1 for 102579398	sot-r.1 for 102577616	cit-r.1 for 102615394	cit-r.1 for 102628261	nta-r.1 for 107780680	nta-r.1 for 107826559

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Ortholog

Ortholog ID: 275

Species

osa

tae

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

KNAT6

KNAT2

STM

LOC100803095

LOC100786454

LOC100800822

KN1

TKn3

POTH15

Function^*

homeobox protein knotted-1-like 12

homeobox protein knotted-1-like 10

homeobox protein KNOX3

homeobox protein knotted-1-like 10

homeobox protein rough sheath 1

homeobox protein knotted-1-like 10

liguleless 3

knotted related homeobox 5

liguleless 4

homeobox protein knotted-1-like 10

homeobox protein rough sheath 1

homeobox protein knotted-1-like 7