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Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.5   4332959   KH domain-containing protein At4g18375 
 osa-r.6   4332959   KH domain-containing protein At4g18375 
 osa-m.8   4332959   KH domain-containing protein At4g18375 
 osa-e.1   4332959   KH domain-containing protein At4g18375 
 zma-u.5   118473387   RNA-binding KH domain-containing protein RCF3 
 zma-u.5   100502234   RNA-binding KH domain-containing protein 
 ath-u.5   AT5G15270   RNA-binding KH domain-containing protein 
 ath-u.5   AT1G14170   RNA-binding KH domain-containing protein 
 gma-u.5   100804157   KH domain-containing protein HEN4 
 gma-u.5   100793526   KH domain-containing protein HEN4 
 gma-u.5   100787863   KH domain-containing protein At4g18375 
 sly-u.5   101245943   KH domain-containing protein At4g18375 
 sly-u.5   101244550   RNA-binding KH domain-containing protein 
 vvi-u.5   100265365   KH domain-containing protein HEN4 
 vvi-u.5   100261236   KH domain-containing protein At4g18375 
 vvi-u.5   100854959   uncharacterized LOC100854959 
 ppo-u.5   7492929   KH domain-containing protein At4g18375 
 ppo-u.5   7498181   KH domain-containing protein At4g18375 
 ppo-u.5   7495986   RNA-binding KH domain-containing protein RCF3 
 mtr-u.5   11422996   RNA-binding KH domain-containing protein RCF3 
 mtr-u.5   11414473   KH domain-containing protein HEN4 

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Top 50 coexpressed genes to 4332959 (osa-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 4332959 (osa-u.5 coexpression data)

CoexMap"4332959"


osaLOC4332959 | Entrez gene ID : 4332959      
Species osa zma ath gma sly vvi ppo mtr bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 4 2 2 3 2 3 3 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010468 [list] [network] regulation of gene expression  (1974 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3003 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5212 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (333 genes)  IEA  
Protein XP_015632182.1 [sequence] [blastp]
XP_066165102.1 [sequence] [blastp]
XP_066165103.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 2,  cyto 1,  mito 1,  golg_plas 1  (predict for XP_015632182.1)
nucl 6,  chlo 2,  cyto 1,  mito 1,  golg_plas 1  (predict for XP_066165102.1)
nucl 6,  chlo 2,  cyto 1,  mito 1,  golg_plas 1  (predict for XP_066165103.1)
Subcellular
localization
TargetP
other 8,  mito 4  (predict for XP_015632182.1)
other 8,  mito 4  (predict for XP_066165102.1)
other 8,  mito 4  (predict for XP_066165103.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.5
for
4332959
osa-r.6
for
4332959
osa-m.8
for
4332959
osa-e.1
for
4332959
zma-u.5
for
118473387
zma-u.5
for
100502234
ath-u.5
for
AT5G15270
ath-u.5
for
AT1G14170
gma-u.5
for
100804157
gma-u.5
for
100793526
gma-u.5
for
100787863
sly-u.5
for
101245943
sly-u.5
for
101244550
vvi-u.5
for
100265365
vvi-u.5
for
100261236
vvi-u.5
for
100854959
ppo-u.5
for
7492929
ppo-u.5
for
7498181
ppo-u.5
for
7495986
mtr-u.5
for
11422996
mtr-u.5
for
11414473


Ortholog ID: 2784
Species osa tae tae hvu bdi bdi zma zma sbi ath ath gma gma sly sly bra bra vvi vvi ppo ppo mtr mtr ghi ghi bna bna sot sot cit cit nta nta
Symbol LOC4332959 LOC123097381 LOC123086013 LOC123448685 LOC100823299 LOC100821237 LOC118473387 LOC100502234 LOC110436638 AT1G14170 AT5G15270 LOC100804157 LOC100784791 LOC101244550 LOC101245943 LOC103846424 LOC103842994 LOC100261236 LOC100265365 LOC7495986 LOC7492929 LOC11422996 LOC11414473 LOC107890459 LOC107890460 LOC106370564 LOC106410756 LOC102606449 LOC102600656 LOC102619226 LOC102609499 LOC107831051 LOC107811648
Function* KH domain-containing protein At4g18375 KH domain-containing protein HEN4 RNA-binding KH domain-containing protein RCF3 KH domain-containing protein At4g18375-like RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein KH domain-containing protein HEN4 RNA-binding KH domain-containing protein RNA-binding KH domain-containing protein KH domain-containing protein HEN4 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein KH domain-containing protein At4g18375 KH domain-containing protein HEN4 RNA-binding KH domain-containing protein RCF3 KH domain-containing protein At4g18375 KH domain-containing protein HEN4 RNA-binding KH domain-containing protein RCF3 KH domain-containing protein At4g18375 RNA-binding KH domain-containing protein RCF3 KH domain-containing protein HEN4 RNA-binding KH domain-containing protein RCF3 KH domain-containing protein HEN4 KH domain-containing protein HEN4 KH domain-containing protein At4g18375-like KH domain-containing protein At4g18375 KH domain-containing protein At4g18375-like KH domain-containing protein HEN4 KH domain-containing protein At4g18375 RNA-binding KH domain-containing protein RCF3-like KH domain-containing protein At4g18375
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04814 Motor proteins 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00514 Other types of O-glycan biosynthesis 3
ath00480 Glutathione metabolism 2
ath00330 Arginine and proline metabolism 2
ath04141 Protein processing in endoplasmic reticulum 2
ath01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03015 mRNA surveillance pathway 6
gma03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 4
sly04142 Lysosome 3
sly05100 Bacterial invasion of epithelial cells 3
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 5
bra04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 6
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
vvi00970 Aminoacyl-tRNA biosynthesis 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03250 Viral life cycle - HIV-1 2
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03015 mRNA surveillance pathway 3
mtr04075 Plant hormone signal transduction 2
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 4
ghi04120 Ubiquitin mediated proteolysis 4
ghi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03013 Nucleocytoplasmic transport 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03018 RNA degradation 3
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 4332959 123097381 123086013 123448685 100823299 100821237 118473387 100502234 110436638 837976 831379 100804157 100784791 101244550 101245943 103846424 103842994 100261236 100265365 7495986 7492929 11422996 11414473 107890459 107890460 106370564 106410756 102606449 102600656 102619226 102609499 107831051 107811648
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