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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   110436638   KH domain-containing protein HEN4 
 zma-u.5   100502234   RNA-binding KH domain-containing protein 
 zma-u.5   118473387   RNA-binding KH domain-containing protein RCF3 
 osa-u.5   4332959   KH domain-containing protein At4g18375 
 ath-u.5   AT5G15270   RNA-binding KH domain-containing protein 
 ath-u.5   AT1G14170   RNA-binding KH domain-containing protein 
 gma-u.5   100784791   RNA-binding KH domain-containing protein RCF3 
 gma-u.5   100793526   KH domain-containing protein HEN4 
 gma-u.5   100804157   KH domain-containing protein HEN4 
 sly-u.5   101245943   KH domain-containing protein At4g18375 
 sly-u.5   101244550   RNA-binding KH domain-containing protein 
 vvi-u.5   100265365   KH domain-containing protein HEN4 
 vvi-u.5   100854959   uncharacterized LOC100854959 
 vvi-u.5   100261236   KH domain-containing protein At4g18375 
 ppo-u.5   7495986   RNA-binding KH domain-containing protein RCF3 
 ppo-u.5   7492929   KH domain-containing protein At4g18375 
 ppo-u.5   7498181   KH domain-containing protein At4g18375 
 mtr-u.5   11422996   RNA-binding KH domain-containing protein RCF3 
 mtr-u.5   11414473   KH domain-containing protein HEN4 

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Top 50 coexpressed genes to 110436638 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 110436638 (sbi-r.1 coexpression data)

CoexMap"110436638"


sbiLOC110436638 | Entrez gene ID : 110436638    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 1 2 3 2 3 3 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010468 [list] [network] regulation of gene expression  (1892 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (267 genes)  IEA  
Protein XP_021319738.1 [sequence] [blastp]
XP_021319740.1 [sequence] [blastp]
XP_021319741.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 2,  cysk 1,  chlo 1,  golg_plas 1  (predict for XP_021319738.1)
nucl 5,  cyto 2,  cysk 1,  chlo 1,  golg_plas 1  (predict for XP_021319740.1)
nucl 5,  cyto 2,  cysk 1,  chlo 1,  golg_plas 1  (predict for XP_021319741.1)
Subcellular
localization
TargetP
other 8,  mito 4  (predict for XP_021319738.1)
other 8,  mito 4  (predict for XP_021319740.1)
other 8,  mito 4  (predict for XP_021319741.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
110436638

.
zma-u.5
for
100502234

.
zma-u.5
for
118473387

.
osa-u.5
for
4332959

.
ath-u.5
for
AT5G15270

.
ath-u.5
for
AT1G14170

.
gma-u.5
for
100784791

.
gma-u.5
for
100793526

.
gma-u.5
for
100804157

.
sly-u.5
for
101245943

.
sly-u.5
for
101244550

.
vvi-u.5
for
100265365

.
vvi-u.5
for
100854959

.
vvi-u.5
for
100261236

.
ppo-u.5
for
7495986

.
ppo-u.5
for
7492929

.
ppo-u.5
for
7498181

.
mtr-u.5
for
11422996

.
mtr-u.5
for
11414473

.


Ortholog ID: 2784
Species ath ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot sot cit cit bdi bdi nta nta
Symbol AT1G14170 AT5G15270 LOC100804157 LOC100784791 LOC101244550 LOC101245943 LOC4332959 LOC118473387 LOC100502234 LOC103846424 LOC103842994 LOC100261236 LOC100265365 LOC7495986 LOC7492929 LOC11422996 LOC11414473 LOC123097381 LOC123086013 LOC123448685 LOC107890459 LOC107890460 LOC106370564 LOC106410756 LOC110436638 LOC102606449 LOC102600656 LOC102619226 LOC102609499 LOC100823299 LOC100821237 LOC107831051 LOC107811648
Function* RNA-binding KH domain-containing protein RNA-binding KH domain-containing protein KH domain-containing protein HEN4 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein KH domain-containing protein HEN4 RNA-binding KH domain-containing protein RCF3 KH domain-containing protein At4g18375 KH domain-containing protein HEN4 RNA-binding KH domain-containing protein RCF3 KH domain-containing protein At4g18375 RNA-binding KH domain-containing protein RCF3 KH domain-containing protein HEN4 KH domain-containing protein HEN4 RNA-binding KH domain-containing protein RCF3 KH domain-containing protein At4g18375-like RNA-binding KH domain-containing protein RCF3 KH domain-containing protein HEN4 KH domain-containing protein HEN4 KH domain-containing protein At4g18375-like KH domain-containing protein HEN4 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375-like KH domain-containing protein HEN4 KH domain-containing protein At4g18375 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3-like KH domain-containing protein At4g18375
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00514 Other types of O-glycan biosynthesis 3
ath00480 Glutathione metabolism 2
ath00330 Arginine and proline metabolism 2
ath04141 Protein processing in endoplasmic reticulum 2
ath01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03015 mRNA surveillance pathway 6
gma03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 4
sly04142 Lysosome 3
sly05100 Bacterial invasion of epithelial cells 3
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 5
bra04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 6
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
vvi00970 Aminoacyl-tRNA biosynthesis 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03250 Viral life cycle - HIV-1 2
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03015 mRNA surveillance pathway 3
mtr04075 Plant hormone signal transduction 2
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04814 Motor proteins 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 4
ghi04120 Ubiquitin mediated proteolysis 4
ghi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03013 Nucleocytoplasmic transport 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03018 RNA degradation 3
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837976 831379 100804157 100784791 101244550 101245943 4332959 118473387 100502234 103846424 103842994 100261236 100265365 7495986 7492929 11422996 11414473 123097381 123086013 123448685 107890459 107890460 106370564 106410756 110436638 102606449 102600656 102619226 102609499 100823299 100821237 107831051 107811648
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