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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107888579   KH domain-containing protein HEN4 
 ghi-r.1   107890459   RNA-binding KH domain-containing protein RCF3 
 ghi-r.1   107890460   KH domain-containing protein HEN4 
 ghi-r.1   107893678   RNA-binding KH domain-containing protein RCF3 
 ath-u.5   AT5G15270   RNA-binding KH domain-containing protein 
 ath-u.5   AT1G14170   RNA-binding KH domain-containing protein 
 bra-r.6   103842994   RNA-binding KH domain-containing protein RCF3 
 bra-r.6   103856127   RNA-binding KH domain-containing protein RCF3 
 bra-r.6   103846424   KH domain-containing protein HEN4 
 bna-r.1   106432715   RNA-binding KH domain-containing protein RCF3 
 bna-r.1   106430986   KH domain-containing protein HEN4 
 bna-r.1   106424771   KH domain-containing protein HEN4 
 cit-r.1   102609499   KH domain-containing protein At4g18375 
 cit-r.1   102619226   KH domain-containing protein HEN4 
 gma-u.5   100784791   RNA-binding KH domain-containing protein RCF3 
 gma-u.5   100793526   KH domain-containing protein HEN4 
 gma-u.5   100804157   KH domain-containing protein HEN4 
 vvi-u.5   100265365   KH domain-containing protein HEN4 
 vvi-u.5   100854959   uncharacterized LOC100854959 
 vvi-u.5   100261236   KH domain-containing protein At4g18375 
 ppo-u.5   7495986   RNA-binding KH domain-containing protein RCF3 
 ppo-u.5   7498181   KH domain-containing protein At4g18375 
 ppo-u.5   7463046   KH domain-containing protein At4g18375 
 mtr-u.5   11422996   RNA-binding KH domain-containing protein RCF3 
 mtr-u.5   11414473   KH domain-containing protein HEN4 
 sly-u.5   101245943   KH domain-containing protein At4g18375 
 sly-u.5   101244550   RNA-binding KH domain-containing protein 
 sot-r.1   102600656   KH domain-containing protein At4g18375-like 
 sot-r.1   102579670   KH domain-containing protein At4g18375-like 
 sot-r.1   102606449   KH domain-containing protein At4g18375 
 nta-r.1   107822217   KH domain-containing protein At4g18375 
 nta-r.1   107811648   KH domain-containing protein At4g18375 
 nta-r.1   107808624   RNA-binding KH domain-containing protein RCF3 
 osa-u.5   4332959   KH domain-containing protein At4g18375 
 zma-u.5   100502234   RNA-binding KH domain-containing protein 
 zma-u.5   118473387   RNA-binding KH domain-containing protein RCF3 
 tae-r.2   123092178   RNA-binding KH domain-containing protein RCF3 
 tae-r.2   123097381   KH domain-containing protein HEN4 
 tae-r.2   123086013   RNA-binding KH domain-containing protein RCF3 
 hvu-r.1   123448685   KH domain-containing protein At4g18375-like 
 sbi-r.1   110436638   KH domain-containing protein HEN4 
 bdi-r.1   100823299   RNA-binding KH domain-containing protein RCF3 
 bdi-r.1   100821237   RNA-binding KH domain-containing protein RCF3 

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Top 50 coexpressed genes to 107888579 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107888579 (ghi-r.1 coexpression data)

CoexMap"107888579"


ghiLOC107888579 | Entrez gene ID : 107888579    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 3 3 2 3 3 3 2 2 3 3 1 2 3 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010468 [list] [network] regulation of gene expression  (5166 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (890 genes)  IEA  
Protein XP_016668232.2 [sequence] [blastp]
XP_040933581.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  nucl 3,  chlo_mito 3,  cyto 1,  cysk_nucl 1  (predict for XP_016668232.2)
mito 4,  chlo_mito 3,  nucl 2,  chlo 1,  cyto_nucl 1  (predict for XP_040933581.1)
Subcellular
localization
TargetP
mito 5,  other 4  (predict for XP_016668232.2)
mito 5,  other 4  (predict for XP_040933581.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107888579
ghi-r.1
for
107890459
ghi-r.1
for
107890460
ghi-r.1
for
107893678
ath-u.5
for
AT5G15270
ath-u.5
for
AT1G14170
bra-r.6
for
103842994
bra-r.6
for
103856127
bra-r.6
for
103846424
bna-r.1
for
106432715
bna-r.1
for
106430986
bna-r.1
for
106424771
cit-r.1
for
102609499
cit-r.1
for
102619226
gma-u.5
for
100784791
gma-u.5
for
100793526
gma-u.5
for
100804157
vvi-u.5
for
100265365
vvi-u.5
for
100854959
vvi-u.5
for
100261236
ppo-u.5
for
7495986
ppo-u.5
for
7498181
ppo-u.5
for
7463046
mtr-u.5
for
11422996
mtr-u.5
for
11414473
sly-u.5
for
101245943
sly-u.5
for
101244550
sot-r.1
for
102600656
sot-r.1
for
102579670
sot-r.1
for
102606449
nta-r.1
for
107822217
nta-r.1
for
107811648
nta-r.1
for
107808624
osa-u.5
for
4332959
zma-u.5
for
100502234
zma-u.5
for
118473387
tae-r.2
for
123092178
tae-r.2
for
123097381
tae-r.2
for
123086013
hvu-r.1
for
123448685
sbi-r.1
for
110436638
bdi-r.1
for
100823299
bdi-r.1
for
100821237


Ortholog ID: 2784
Species ghi ghi ghi ath ath bra bra bra bna bna bna cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr sly sly sot sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi bdi
Symbol LOC107890459 LOC107890460 LOC107920179 AT5G15270 AT1G14170 LOC103842994 LOC103856127 LOC103846424 LOC106430986 LOC106370564 LOC106410756 LOC102609499 LOC102619226 LOC100784791 LOC100804157 LOC100787863 LOC100265365 LOC100854959 LOC100261236 LOC7495986 LOC7463046 LOC7492929 LOC11422996 LOC11414473 LOC101245943 LOC101244550 LOC102600656 LOC102579670 LOC102606449 LOC107811648 LOC107808624 LOC107831051 LOC4332959 LOC100502234 LOC118473387 LOC123092178 LOC123097381 LOC123086013 LOC123448685 LOC110436638 LOC100823299 LOC100821237
Function* RNA-binding KH domain-containing protein RCF3 KH domain-containing protein HEN4 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RNA-binding KH domain-containing protein RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 KH domain-containing protein HEN4 KH domain-containing protein HEN4 KH domain-containing protein HEN4 KH domain-containing protein At4g18375-like KH domain-containing protein At4g18375 KH domain-containing protein HEN4 RNA-binding KH domain-containing protein RCF3 KH domain-containing protein HEN4 KH domain-containing protein At4g18375 KH domain-containing protein HEN4 uncharacterized LOC100854959 KH domain-containing protein At4g18375 RNA-binding KH domain-containing protein RCF3 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 RNA-binding KH domain-containing protein RCF3 KH domain-containing protein HEN4 KH domain-containing protein At4g18375 RNA-binding KH domain-containing protein KH domain-containing protein At4g18375-like KH domain-containing protein At4g18375-like KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3-like KH domain-containing protein At4g18375 RNA-binding KH domain-containing protein RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 KH domain-containing protein HEN4 RNA-binding KH domain-containing protein RCF3 KH domain-containing protein At4g18375-like KH domain-containing protein HEN4 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 4
ghi04120 Ubiquitin mediated proteolysis 4
ghi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00514 Other types of O-glycan biosynthesis 3
ath00480 Glutathione metabolism 2
ath00330 Arginine and proline metabolism 2
ath04141 Protein processing in endoplasmic reticulum 2
ath01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 5
bra04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03013 Nucleocytoplasmic transport 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03015 mRNA surveillance pathway 6
gma03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
vvi00970 Aminoacyl-tRNA biosynthesis 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 6
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03250 Viral life cycle - HIV-1 2
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03015 mRNA surveillance pathway 3
mtr04075 Plant hormone signal transduction 2
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 4
sly04142 Lysosome 3
sly05100 Bacterial invasion of epithelial cells 3
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03018 RNA degradation 3
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03083 Polycomb repressive complex 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03018 RNA degradation 3
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04814 Motor proteins 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107890459 107890460 107920179 831379 837976 103842994 103856127 103846424 106430986 106370564 106410756 102609499 102619226 100784791 100804157 100787863 100265365 100854959 100261236 7495986 7463046 7492929 11422996 11414473 101245943 101244550 102600656 102579670 102606449 107811648 107808624 107831051 4332959 100502234 118473387 123092178 123097381 123086013 123448685 110436638 100823299 100821237
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