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Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.5   4335414   protein TRANSPARENT TESTA 9 
 osa-r.6   4335414   protein TRANSPARENT TESTA 9 
 osa-m.8   4335414   protein TRANSPARENT TESTA 9 
 osa-e.1   4335414   protein TRANSPARENT TESTA 9 
 zma-u.5   100383777   uncharacterized LOC100383777 
 ath-u.5   AT3G28430   CLEC16A-like protein 
 gma-u.5   100789779   protein TRANSPARENT TESTA 9 
 gma-u.5   100786267   protein TRANSPARENT TESTA 9 
 sly-u.5   101267620   protein TRANSPARENT TESTA 9 
 vvi-u.5   100253058   protein TRANSPARENT TESTA 9 
 ppo-u.5   7474720   protein TRANSPARENT TESTA 9 
 ppo-u.5   7490489   protein TRANSPARENT TESTA 9 
 mtr-u.5   11445431   protein TRANSPARENT TESTA 9 
 mtr-u.5   11445545   protein TRANSPARENT TESTA 9 

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Top 50 coexpressed genes to 4335414 (osa-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 4335414 (osa-u.5 coexpression data)

CoexMap"4335414"


osaLOC4335414 | Entrez gene ID : 4335414      
Species osa zma ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 1 1 2 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1901096 [list] [network] regulation of autophagosome maturation  (1 genes)  IEA  
GO:0008333 [list] [network] endosome to lysosome transport  (3 genes)  IEA  
GO:0016197 [list] [network] endosomal transport  (74 genes)  IEA  
GO CC
GO:0036020 [list] [network] endolysosome membrane  (1 genes)  IEA  
GO:0005770 [list] [network] late endosome  (35 genes)  IEA  
GO MF
Protein XP_015636168.2 [sequence] [blastp]
XP_066165753.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 2,  chlo 2,  E.R. 2,  cysk_nucl 1,  mito 1,  E.R._vacu 1,  E.R._plas 1  (predict for XP_015636168.2)
chlo 4,  nucl 1,  mito 1,  cysk_nucl 1,  plas 1,  extr 1,  vacu 1,  cyto_mito 1  (predict for XP_066165753.1)
Subcellular
localization
TargetP
mito 9,  other 4  (predict for XP_015636168.2)
other 3,  chlo 3  (predict for XP_066165753.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.5
for
4335414

.
osa-r.6
for
4335414

.
osa-m.8
for
4335414

.
osa-e.1
for
4335414

.
zma-u.5
for
100383777

.
ath-u.5
for
AT3G28430

.
gma-u.5
for
100789779

.
gma-u.5
for
100786267

.
sly-u.5
for
101267620

.
vvi-u.5
for
100253058

.
ppo-u.5
for
7474720

.
ppo-u.5
for
7490489

.
mtr-u.5
for
11445431

.
mtr-u.5
for
11445545

.


Ortholog ID: 7236
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol AT3G28430 LOC100789779 LOC100786267 LOC101267620 LOC4335414 LOC100383777 LOC103828329 LOC103829489 LOC100253058 LOC7474720 LOC7490489 LOC11445545 LOC11445431 LOC123045193 LOC123188935 LOC123426416 LOC121225267 LOC107937193 LOC106355267 LOC106357617 CHLRE_12g515250v5 LOC8085777 LOC8079737 LOC102605720 LOC102610159 LOC100843426 LOC107760996 LOC107799774
Function* CLEC16A-like protein protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 uncharacterized LOC100383777 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 uncharacterized protein uncharacterized LOC8085777 uncharacterized LOC8079737 uncharacterized LOC102605720 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 3
gma03250 Viral life cycle - HIV-1 2
gma00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 3
gma00564 Glycerophospholipid metabolism 2
gma00565 Ether lipid metabolism 2
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 4
bra04382 Cornified envelope formation 4
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 2
bra04382 Cornified envelope formation 2
bra04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 8
ghi04382 Cornified envelope formation 8
ghi03013 Nucleocytoplasmic transport 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 3
ghi04382 Cornified envelope formation 2
ghi03013 Nucleocytoplasmic transport 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822473 100789779 100786267 101267620 4335414 100383777 103828329 103829489 100253058 7474720 7490489 11445545 11445431 123045193 123188935 123426416 121225267 107937193 106355267 106357617 66055558 8085777 8079737 102605720 102610159 100843426 107760996 107799774
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