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Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.5   4340839   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 osa-r.6   4340839   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 osa-m.8   4340839   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 osa-e.1   4340839   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 zma-u.5   732768   RNA-binding CRS1 / YhbY (CRM) domain protein 
 ath-u.5   AT4G13070   RNA-binding CRS1 / YhbY (CRM) domain protein 
 gma-u.5   100817882   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 gma-u.5   100809589   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 sly-u.5   101258700   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 vvi-u.5   100252943   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 ppo-u.5   112323801   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 mtr-u.5   11422886   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 

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Top 50 coexpressed genes to 4340839 (osa-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 4340839 (osa-u.5 coexpression data)

CoexMap"4340839"


osaLOC4340839 | Entrez gene ID : 4340839      
Species osa zma ath gma sly vvi ppo mtr tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 4 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1223 genes)  IEA  
Protein XP_015644409.1 [sequence] [blastp]
XP_066167654.1 [sequence] [blastp]
XP_066167655.1 [sequence] [blastp]
XP_066167656.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 3,  mito 1,  cyto_nucl 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_015644409.1)
chlo 6,  nucl 3,  mito 1,  cyto_nucl 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_066167654.1)
chlo 6,  nucl 3,  mito 1,  cyto_nucl 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_066167655.1)
chlo 6,  nucl 3,  mito 1,  cyto_nucl 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_066167656.1)
Subcellular
localization
TargetP
chlo 6,  mito 6  (predict for XP_015644409.1)
chlo 6,  mito 6  (predict for XP_066167654.1)
chlo 6,  mito 6  (predict for XP_066167655.1)
chlo 6,  mito 6  (predict for XP_066167656.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.5
for
4340839

.
osa-r.6
for
4340839

.
osa-m.8
for
4340839

.
osa-e.1
for
4340839

.
zma-u.5
for
732768

.
ath-u.5
for
AT4G13070

.
gma-u.5
for
100817882

.
gma-u.5
for
100809589

.
sly-u.5
for
101258700

.
vvi-u.5
for
100252943

.
ppo-u.5
for
112323801

.
mtr-u.5
for
11422886

.


Ortholog ID: 9569
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT4G13070 LOC100809589 LOC100817882 LOC101258700 LOC4340839 LOC732768 LOC103833341 LOC100252943 LOC112323801 LOC11422886 LOC123150389 LOC123160134 LOC123410208 LOC107913563 LOC107920552 LOC106423624 LOC106416015 LOC8073672 LOC102585167 LOC102628680 LOC100845271 LOC107800342 LOC107782523
Function* RNA-binding CRS1 / YhbY (CRM) domain protein uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic RNA-binding CRS1 / YhbY (CRM) domain protein uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic-like uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized LOC107800342 uncharacterized LOC107782523
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00220 Arginine biosynthesis 4
gma01230 Biosynthesis of amino acids 3
gma00250 Alanine, aspartate and glutamate metabolism 2
gma03008 Ribosome biogenesis in eukaryotes 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 3
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 2
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04517 IgSF CAM signaling 4
ghi04518 Integrin signaling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04517 IgSF CAM signaling 4
ghi04518 Integrin signaling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi03018 RNA degradation 3
bdi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta03250 Viral life cycle - HIV-1 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826921 100809589 100817882 101258700 4340839 732768 103833341 100252943 112323801 11422886 123150389 123160134 123410208 107913563 107920552 106423624 106416015 8073672 102585167 102628680 100845271 107800342 107782523
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