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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   met5   DNA methyl transferase5 
 zma-r.6   met5   DNA methyl transferase5 
 zma-m.5   met5   DNA methyl transferase5 
 zma-u.5   met2   DNA methyltransferase2 
 osa-u.5   4338140   DNA (cytosine-5)-methyltransferase CMT2-like 
 osa-u.5   4347954   DNA (cytosine-5)-methyltransferase CMT3-like 
 ath-u.5   CMT2   chromomethylase 2 
 ath-u.5   CMT3   chromomethylase 3 
 gma-u.5   100799480   DNA (cytosine-5)-methyltransferase CMT3 
 gma-u.5   100798061   putative DNA (cytosine-5)-methyltransferase CMT1 
 gma-u.5   100817688   putative DNA (cytosine-5)-methyltransferase CMT1 
 sly-u.5   CMT4   DNA (cytosine-5)-methyltransferase 
 sly-u.5   CMT3   DNA (cytosine-5)-methyltransferase 3 
 sly-u.5   CMT2   DNA (cytosine-5)-methyltransferase CMT2 
 vvi-u.5   104882030   DNA (cytosine-5)-methyltransferase CMT2-like 
 vvi-u.5   100258788   DNA (cytosine-5)-methyltransferase CMT3 
 vvi-u.5   100255190   DNA (cytosine-5)-methyltransferase CMT2 
 ppo-u.5   7483264   DNA (cytosine-5)-methyltransferase CMT3 
 ppo-u.5   18096996   DNA (cytosine-5)-methyltransferase CMT2 
 mtr-u.5   11416506   putative DNA (cytosine-5)-methyltransferase CMT1 
 mtr-u.5   25491491   DNA (cytosine-5)-methyltransferase CMT3 
 mtr-u.5   25501554   DNA (cytosine-5)-methyltransferase CMT2 

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Top 50 coexpressed genes to met5 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to met5 (zma-u.5 coexpression data)

CoexMap"542060"


zmamet5 | Entrez gene ID : 542060      
Species zma osa ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 2 3 3 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma00270 [list] [network] Cysteine and methionine metabolism (144 genes)
GO BP
GO:0044027 [list] [network] negative regulation of gene expression via chromosomal CpG island methylation  (7 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3371 genes)  IEA  
GO MF
GO:0003886 [list] [network] DNA (cytosine-5-)-methyltransferase activity  (6 genes)  IEA  
GO:0003682 [list] [network] chromatin binding  (149 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2288 genes)  IEA  
Protein NP_001105167.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 1,  cyto 1,  mito 1,  cyto_nucl 1  (predict for NP_001105167.2)
Subcellular
localization
TargetP
chlo 6,  mito 4  (predict for NP_001105167.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
met5

.
zma-r.6
for
met5

.
zma-m.5
for
met5

.
zma-u.5
for
met2

.
osa-u.5
for
4338140

.
osa-u.5
for
4347954

.
ath-u.5
for
CMT2

.
ath-u.5
for
CMT3

.
gma-u.5
for
100799480

.
gma-u.5
for
100798061

.
gma-u.5
for
100817688

.
sly-u.5
for
CMT4

.
sly-u.5
for
CMT3

.
sly-u.5
for
CMT2

.
vvi-u.5
for
104882030

.
vvi-u.5
for
100258788

.
vvi-u.5
for
100255190

.
ppo-u.5
for
7483264

.
ppo-u.5
for
18096996

.
mtr-u.5
for
11416506

.
mtr-u.5
for
25491491

.
mtr-u.5
for
25501554

.


Ortholog ID: 1467
Species ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr hvu hvu ghi ghi bna sbi sbi sot sot cit cit bdi nta nta
Symbol CMT3 LOC100817688 LOC100798061 CMT2 CMT4 LOC4347954 met5 met2 LOC103873920 LOC103871899 LOC100249359 LOC104882030 LOC18096996 LOC7483264 LOC25491491 LOC25496870 LOC123400990 LOC123448977 LOC107921173 LOC121205071 LOC106349859 LOC8055427 LOC8058269 LOC102589952 LOC102580641 LOC102617543 LOC102609368 LOC100823231 LOC107770918 LOC107774010
Function* chromomethylase 3 putative DNA (cytosine-5)-methyltransferase CMT1 putative DNA (cytosine-5)-methyltransferase CMT1 DNA (cytosine-5)-methyltransferase CMT2 DNA (cytosine-5)-methyltransferase DNA (cytosine-5)-methyltransferase CMT3-like DNA methyl transferase5 DNA methyltransferase2 DNA (cytosine-5)-methyltransferase CMT3 putative DNA (cytosine-5)-methyltransferase CMT1 DNA (cytosine-5)-methyltransferase CMT2 DNA (cytosine-5)-methyltransferase CMT2-like DNA (cytosine-5)-methyltransferase CMT2 DNA (cytosine-5)-methyltransferase CMT3 DNA (cytosine-5)-methyltransferase CMT3 putative DNA (cytosine-5)-methyltransferase CMT1 DNA (cytosine-5)-methyltransferase 1-like DNA (cytosine-5)-methyltransferase CMT2-like putative DNA (cytosine-5)-methyltransferase CMT1 uncharacterized LOC121205071 putative DNA (cytosine-5)-methyltransferase CMT1 DNA (cytosine-5)-methyltransferase 1 DNA (cytosine-5)-methyltransferase CMT2 DNA (cytosine-5)-methyltransferase CMT2-like DNA (cytosine-5)-methyltransferase 1 putative DNA (cytosine-5)-methyltransferase CMT1 DNA (cytosine-5)-methyltransferase CMT2-like DNA (cytosine-5)-methyltransferase CMT2 DNA (cytosine-5)-methyltransferase CMT3 DNA (cytosine-5)-methyltransferase CMT3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 4
ath03082 ATP-dependent chromatin remodeling 3
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
ath03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00240 Pyrimidine metabolism 2
gma01232 Nucleotide metabolism 2
gma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03460 Fanconi anemia pathway 3
sly00240 Pyrimidine metabolism 3
sly01232 Nucleotide metabolism 3
sly00270 Cysteine and methionine metabolism 2
sly00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 6
zma00270 Cysteine and methionine metabolism 2
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 6
zma00270 Cysteine and methionine metabolism 2
zma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00591 Linoleic acid metabolism 3
bra00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00240 Pyrimidine metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 5
mtr00270 Cysteine and methionine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00270 Cysteine and methionine metabolism 4
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03420 Nucleotide excision repair 3
bna03430 Mismatch repair 3
bna00270 Cysteine and methionine metabolism 2
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03440 Homologous recombination 3
sbi00270 Cysteine and methionine metabolism 2
sbi03082 ATP-dependent chromatin remodeling 2
sbi03030 DNA replication 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 3
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00061 Fatty acid biosynthesis 3
sot00620 Pyruvate metabolism 3
sot01200 Carbon metabolism 3
sot01212 Fatty acid metabolism 3
sot00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 3
sot03410 Base excision repair 3
sot03420 Nucleotide excision repair 3
sot03440 Homologous recombination 3
sot03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 3
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
nta04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843313 100817688 100798061 101267211 101244018 4347954 542060 541827 103873920 103871899 100249359 104882030 18096996 7483264 25491491 25496870 123400990 123448977 107921173 121205071 106349859 8055427 8058269 102589952 102580641 102617543 102609368 100823231 107770918 107774010
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