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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   542185   RuBisCO large subunit-binding protein subunit beta, chloroplastic 
 zma-r.6   542185   RuBisCO large subunit-binding protein subunit beta, chloroplastic 
 zma-m.5   542185   RuBisCO large subunit-binding protein subunit beta, chloroplastic 
 zma-u.5   100281701   RuBisCO large subunit-binding protein subunit alpha 
 zma-u.5   100280498   ruBisCO large subunit-binding protein subunit beta 
 zma-u.5   103629384   ruBisCO large subunit-binding protein subunit beta, chloroplastic 
 osa-u.5   107275738   chaperonin 60 subunit beta 4, chloroplastic 
 osa-u.5   4327993   ruBisCO large subunit-binding protein subunit beta, chloroplastic 
 osa-u.5   4351976   ruBisCO large subunit-binding protein subunit alpha, chloroplastic 
 ath-u.5   Cpn60beta4   TCP-1/cpn60 chaperonin family protein 
 ath-u.5   CPN60A   chaperonin-60alpha 
 ath-u.5   Cpn60beta2   TCP-1/cpn60 chaperonin family protein 
 gma-u.5   100819369   ruBisCO large subunit-binding protein subunit beta, chloroplastic 
 gma-u.5   100786724   chaperonin 60 subunit alpha 2, chloroplastic 
 gma-u.5   100777674   ruBisCO large subunit-binding protein subunit beta, chloroplastic 
 sly-u.5   101259113   chaperonin 60 subunit alpha 2, chloroplastic 
 sly-u.5   101250405   chaperonin 60 subunit beta 4, chloroplastic 
 sly-u.5   101253117   ruBisCO large subunit-binding protein subunit beta, chloroplastic 
 vvi-u.5   100257653   chaperonin 60 subunit alpha 2, chloroplastic 
 vvi-u.5   100263832   ruBisCO large subunit-binding protein subunit beta, chloroplastic 
 vvi-u.5   100261815   ruBisCO large subunit-binding protein subunit beta, chloroplastic 
 ppo-u.5   18098223   ruBisCO large subunit-binding protein subunit alpha 
 ppo-u.5   18105953   chaperonin 60 subunit alpha 2, chloroplastic 
 ppo-u.5   7461344   chaperonin 60 subunit beta 2, chloroplastic 
 mtr-u.5   120580586   chaperonin 60 subunit beta 4, chloroplastic 
 mtr-u.5   25482039   ruBisCO large subunit-binding protein subunit beta, chloroplastic 
 mtr-u.5   25482040   ruBisCO large subunit-binding protein subunit beta, chloroplastic 

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Top 50 coexpressed genes to 542185 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542185 (zma-u.5 coexpression data)

CoexMap"542185"


zmaLOC542185 | Entrez gene ID : 542185      
Species zma osa ath gma sly vvi ppo mtr cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 6 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03018 [list] [network] RNA degradation (140 genes)
GO BP
GO:0042026 [list] [network] protein refolding  (26 genes)  IEA  
GO CC
GO MF
GO:0140662 [list] [network] ATP-dependent protein folding chaperone  (83 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2473 genes)  IEA  
Protein NP_001306697.1 [sequence] [blastp]
XP_008659370.1 [sequence] [blastp]
XP_008659372.1 [sequence] [blastp]
XP_008659373.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 4  (predict for NP_001306697.1)
chlo 9,  mito 1  (predict for XP_008659370.1)
chlo 9,  mito 1  (predict for XP_008659372.1)
chlo 9,  mito 1  (predict for XP_008659373.1)
Subcellular
localization
TargetP
other 3  (predict for NP_001306697.1)
chlo 5  (predict for XP_008659370.1)
chlo 5  (predict for XP_008659372.1)
chlo 5  (predict for XP_008659373.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
542185

.
zma-r.6
for
542185

.
zma-m.5
for
542185

.
zma-u.5
for
100281701

.
zma-u.5
for
100280498

.
zma-u.5
for
103629384

.
osa-u.5
for
107275738

.
osa-u.5
for
4327993

.
osa-u.5
for
4351976

.
ath-u.5
for
Cpn60beta4

.
ath-u.5
for
CPN60A

.
ath-u.5
for
Cpn60beta2

.
gma-u.5
for
100819369

.
gma-u.5
for
100786724

.
gma-u.5
for
100777674

.
sly-u.5
for
101259113

.
sly-u.5
for
101250405

.
sly-u.5
for
101253117

.
vvi-u.5
for
100257653

.
vvi-u.5
for
100263832

.
vvi-u.5
for
100261815

.
ppo-u.5
for
18098223

.
ppo-u.5
for
18105953

.
ppo-u.5
for
7461344

.
mtr-u.5
for
120580586

.
mtr-u.5
for
25482039

.
mtr-u.5
for
25482040

.


Ortholog ID: 357
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol Cpn60alpha2 CPN60B LOC100785937 LOC100795157 LOC101259035 LOC101265242 LOC4327993 LOC9270136 LOC103647277 LOC103629384 LOC103832584 LOC103829780 LOC100251252 LOC100257653 LOC18098223 LOC7491161 LOC25482039 LOC25482040 LOC123142923 LOC543499 LOC123452026 LOC107895043 LOC107945220 LOC106425605 LOC106400776 CHLRE_17g741450v5 CHLRE_07g339150v5 LOC8054346 LOC8066904 LOC102594819 LOC102577751 LOC102609990 LOC102611539 LOC100837414 LOC100842360 LOC107783939 LOC107830331
Function* TCP-1/cpn60 chaperonin family protein chaperonin 60 beta ruBisCO large subunit-binding protein subunit beta, chloroplastic chaperonin 60 subunit alpha 2, chloroplastic ruBisCO large subunit-binding protein subunit beta, chloroplastic ruBisCO large subunit-binding protein subunit alpha, chloroplastic ruBisCO large subunit-binding protein subunit beta, chloroplastic ruBisCO large subunit-binding protein subunit alpha uncharacterized LOC103647277 ruBisCO large subunit-binding protein subunit beta, chloroplastic ruBisCO large subunit-binding protein subunit beta, chloroplastic ruBisCO large subunit-binding protein subunit beta, chloroplastic chaperonin 60 subunit beta 4, chloroplastic chaperonin 60 subunit alpha 2, chloroplastic ruBisCO large subunit-binding protein subunit alpha ruBisCO large subunit-binding protein subunit alpha ruBisCO large subunit-binding protein subunit beta, chloroplastic ruBisCO large subunit-binding protein subunit beta, chloroplastic ruBisCO large subunit-binding protein subunit beta, chloroplastic ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like ruBisCO large subunit-binding protein subunit alpha-like chaperonin 60 subunit beta 4, chloroplastic chaperonin 60 subunit alpha 2, chloroplastic chaperonin 60 subunit beta 4, chloroplastic ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like uncharacterized protein uncharacterized protein chaperonin 60 subunit beta 4, chloroplastic ruBisCO large subunit-binding protein subunit beta, chloroplastic ruBisCO large subunit-binding protein subunit alpha ruBisCO large subunit-binding protein subunit beta, chloroplastic ruBisCO large subunit-binding protein subunit beta, chloroplastic chaperonin 60 subunit alpha 2, chloroplastic ruBisCO large subunit-binding protein subunit beta, chloroplastic ruBisCO large subunit-binding protein subunit beta, chloroplastic ruBisCO large subunit-binding protein subunit beta, chloroplastic ruBisCO large subunit-binding protein subunit beta, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath04141 Protein processing in endoplasmic reticulum 3
ath00970 Aminoacyl-tRNA biosynthesis 2
ath03040 Spliceosome 2
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 5
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00061 Fatty acid biosynthesis 6
sly01212 Fatty acid metabolism 6
sly00620 Pyruvate metabolism 3
sly01200 Carbon metabolism 3
sly00780 Biotin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 4
osa04626 Plant-pathogen interaction 3
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04626 Plant-pathogen interaction 3
osa03018 RNA degradation 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma03040 Spliceosome 2
zma04144 Endocytosis 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 4
bra03040 Spliceosome 2
bra04141 Protein processing in endoplasmic reticulum 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 4
ppo04141 Protein processing in endoplasmic reticulum 3
ppo03040 Spliceosome 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 4
ppo04141 Protein processing in endoplasmic reticulum 3
ppo00620 Pyruvate metabolism 3
ppo01200 Carbon metabolism 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 5
tae02010 ABC transporters 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 7
tae03010 Ribosome 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
hvu03030 DNA replication 2
hvu03410 Base excision repair 2
hvu03420 Nucleotide excision repair 2
hvu03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 9
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna00230 Purine metabolism 3
bna00240 Pyrimidine metabolism 3
bna01232 Nucleotide metabolism 3
bna01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 4
sbi00730 Thiamine metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 4
sbi04626 Plant-pathogen interaction 3
sbi00620 Pyruvate metabolism 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
sot00020 Citrate cycle (TCA cycle) 2
sot00270 Cysteine and methionine metabolism 2
sot00566 Sulfoquinovose metabolism 2
sot00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
cit03020 RNA polymerase 2
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 3
bdi00970 Aminoacyl-tRNA biosynthesis 3
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta00500 Starch and sucrose metabolism 2
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 6
nta04141 Protein processing in endoplasmic reticulum 5
nta00710 Carbon fixation by Calvin cycle 4
nta01200 Carbon metabolism 4
nta03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832000 841996 100785937 100795157 101259035 101265242 4327993 9270136 103647277 103629384 103832584 103829780 100251252 100257653 18098223 7491161 25482039 25482040 123142923 543499 123452026 107895043 107945220 106425605 106400776 5726659 5717970 8054346 8066904 102594819 102577751 102609990 102611539 100837414 100842360 107783939 107830331
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