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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   543104   chalcone synthase 2 
 osa-u.5   4350636   chalcone synthase 1-like 
 osa-u.5   4342725   chalcone synthase 2 
 zma-u.5   100282642   chalcone synthase 
 zma-u.5   100274415   chalcone synthase 
 ath-u.5   TT4   Chalcone and stilbene synthase family protein 
 gma-u.5   CHS1   chalcone synthase 1 
 gma-u.5   CHS4B   chalcone synthase 4b 
 gma-u.5   CHS13   chalcone synthase 13 
 sly-u.5   CHS2   chalcone synthase 
 sly-u.5   CHS1   chalcone synthase 
 vvi-u.5   100853590   stilbene synthase 4-like 
 vvi-u.5   100263443   chalcone synthase 
 ppo-u.5   7460519   chalcone synthase 1 
 ppo-u.5   7460520   chalcone synthase 1 
 mtr-u.5   25494497   chalcone synthase 9 
 mtr-u.5   120577917   chalcone synthase 4 
 mtr-u.5   11407003   chalcone synthase 4 

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Top 50 coexpressed genes to 543104 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 543104 (tae-r.2 coexpression data)

CoexMap"543104"


taeLOC543104 | Entrez gene ID : 543104    
Species tae osa zma ath gma sly vvi ppo mtr hvu sot nta bra cit ghi bna bdi sbi cre
Paralog 1 2 2 1 3 2 2 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes00941 [list] [network] Flavonoid biosynthesis (197 genes)
taes04712 [list] [network] Circadian rhythm - plant (179 genes)
GO BP
GO:0030639 [list] [network] polyketide biosynthetic process  (100 genes)  IEA  
GO CC
GO MF
GO:0016747 [list] [network] acyltransferase activity, transferring groups other than amino-acyl groups  (1322 genes)  IEA  
Protein XP_044452365.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  pero 2  (predict for XP_044452365.1)
Subcellular
localization
TargetP
other 8  (predict for XP_044452365.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
543104

.
osa-u.5
for
4350636

.
osa-u.5
for
4342725

.
zma-u.5
for
100282642

.
zma-u.5
for
100274415

.
ath-u.5
for
TT4

.
gma-u.5
for
CHS1

.
gma-u.5
for
CHS4B

.
gma-u.5
for
CHS13

.
sly-u.5
for
CHS2

.
sly-u.5
for
CHS1

.
vvi-u.5
for
100853590

.
vvi-u.5
for
100263443

.
ppo-u.5
for
7460519

.
ppo-u.5
for
7460520

.
mtr-u.5
for
25494497

.
mtr-u.5
for
120577917

.
mtr-u.5
for
11407003

.


Ortholog ID: 258
Species ath gma gma sly sly osa osa zma zma bra bra vvi vvi mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi cit cit bdi nta nta
Symbol TT4 CHS4B CHS3B CHS1 CHS2 LOC4350636 LOC4342725 LOC100282642 LOC100274415 LOC103836793 LOC103846527 LOC100855299 LOC100246283 LOC25499670 LOC11411483 LOC123123470 LOC123123471 LOC123442440 LOC123442699 LOC107888447 LOC107888463 LOC106367233 LOC106426632 LOC8069670 LOC8064814 LOC102619137 LOC102606708 LOC100829639 LOC107813425 LOC107832236
Function* Chalcone and stilbene synthase family protein chalcone synthase 4b chalcone synthase 3 chalcone synthase chalcone synthase chalcone synthase 1-like chalcone synthase 2 chalcone synthase chalcone synthase chalcone synthase 3 chalcone synthase 1 stilbene synthase 2 stilbene synthase 5-like chalcone synthase 4 chalcone synthase 1A chalcone synthase 2 chalcone synthase 2 chalcone synthase 2-like chalcone synthase 2-like chalcone synthase chalcone synthase 2 chalcone synthase 3 chalcone synthase 3-like chalcone synthase 1 chalcone synthase 2 acridone synthase 2-like chalcone synthase 1 chalcone synthase 2 chalcone synthase J chalcone synthase G
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00941 Flavonoid biosynthesis 5
ath00940 Phenylpropanoid biosynthesis 2
ath00944 Flavone and flavonol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00941 Flavonoid biosynthesis 12
gma04712 Circadian rhythm - plant 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00941 Flavonoid biosynthesis 11
gma04712 Circadian rhythm - plant 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00941 Flavonoid biosynthesis 7
sly00944 Flavone and flavonol biosynthesis 2
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00941 Flavonoid biosynthesis 7
sly00944 Flavone and flavonol biosynthesis 2
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00941 Flavonoid biosynthesis 6
osa00944 Flavone and flavonol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00941 Flavonoid biosynthesis 7
zma04712 Circadian rhythm - plant 2
zma00460 Cyanoamino acid metabolism 2
zma00944 Flavone and flavonol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00941 Flavonoid biosynthesis 8
zma04712 Circadian rhythm - plant 2
zma00940 Phenylpropanoid biosynthesis 2
zma00944 Flavone and flavonol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00941 Flavonoid biosynthesis 9
bra00940 Phenylpropanoid biosynthesis 3
bra04712 Circadian rhythm - plant 3
bra01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 19
vvi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
vvi00940 Phenylpropanoid biosynthesis 2
vvi00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00941 Flavonoid biosynthesis 13
mtr04712 Circadian rhythm - plant 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00941 Flavonoid biosynthesis 8
mtr04712 Circadian rhythm - plant 7
mtr00040 Pentose and glucuronate interconversions 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00941 Flavonoid biosynthesis 2
tae04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00941 Flavonoid biosynthesis 2
tae04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00941 Flavonoid biosynthesis 2
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00941 Flavonoid biosynthesis 5
hvu04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00941 Flavonoid biosynthesis 7
ghi04712 Circadian rhythm - plant 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00941 Flavonoid biosynthesis 7
ghi04712 Circadian rhythm - plant 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00941 Flavonoid biosynthesis 14
bna04712 Circadian rhythm - plant 9
bna00071 Fatty acid degradation 2
bna00280 Valine, leucine and isoleucine degradation 2
bna00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00941 Flavonoid biosynthesis 14
bna04712 Circadian rhythm - plant 9
bna00071 Fatty acid degradation 2
bna00280 Valine, leucine and isoleucine degradation 2
bna00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00941 Flavonoid biosynthesis 14
sbi04712 Circadian rhythm - plant 9
sbi00944 Flavone and flavonol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 4
cit00996 Biosynthesis of various alkaloids 2
cit00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 6
cit01230 Biosynthesis of amino acids 5
cit00020 Citrate cycle (TCA cycle) 3
cit00480 Glutathione metabolism 2
cit04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00941 Flavonoid biosynthesis 5
bdi00944 Flavone and flavonol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta02010 ABC transporters 3
nta00904 Diterpenoid biosynthesis 3
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta02010 ABC transporters 4
nta00904 Diterpenoid biosynthesis 4
nta00941 Flavonoid biosynthesis 2
nta04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831241 100792581 106794283 778294 778295 4350636 4342725 100282642 100274415 103836793 103846527 100855299 100246283 25499670 11411483 123123470 123123471 123442440 123442699 107888447 107888463 106367233 106426632 8069670 8064814 102619137 102606708 100829639 107813425 107832236
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