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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   tVPS41   VPS41 
 sly-r.6   tVPS41   VPS41 
 sly-m.5   tVPS41   VPS41 
 sly-u.5   101265892   vacuolar protein sorting-associated protein 41 homolog 
 ath-u.5   VPS41   vacuolar protein sorting 41 
 gma-u.5   100804711   vacuolar protein sorting-associated protein 41 homolog 
 gma-u.5   100804340   vacuolar protein sorting-associated protein 41 homolog 
 vvi-u.5   100244792   vacuolar protein sorting-associated protein 41 homolog 
 ppo-u.5   7496468   vacuolar protein sorting-associated protein 41 homolog 
 ppo-u.5   7473001   vacuolar protein sorting-associated protein 41 homolog 
 mtr-u.5   25492355   vacuolar protein sorting-associated protein 41 homolog 
 osa-u.5   4335134   vacuolar protein sorting-associated protein 41 homolog 
 zma-u.5   100304345   Vacuolar protein sorting-associated protein 41-like protein 

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Top 50 coexpressed genes to tVPS41 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to tVPS41 (sly-u.5 coexpression data)

CoexMap"544040"


slytVPS41 | Entrez gene ID : 544040      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 1 2 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly04148 [list] [network] Efferocytosis (57 genes)
GO BP
GO:0034058 [list] [network] endosomal vesicle fusion  (6 genes)  IEA  
GO:0006623 [list] [network] protein targeting to vacuole  (13 genes)  IEA  
GO:0009267 [list] [network] cellular response to starvation  (29 genes)  IEA  
GO:0016236 [list] [network] macroautophagy  (37 genes)  IEA  
GO:0006886 [list] [network] intracellular protein transport  (272 genes)  IEA  
GO:0016192 [list] [network] vesicle-mediated transport  (469 genes)  IEA  
GO CC
GO:0030897 [list] [network] HOPS complex  (6 genes)  IEA  
GO:0005770 [list] [network] late endosome  (35 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein NP_001233981.1 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 3,  nucl 1,  cyto 1,  vacu 1,  golg 1,  cyto_nucl 1  (predict for NP_001233981.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001233981.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
tVPS41

.
sly-r.6
for
tVPS41

.
sly-m.5
for
tVPS41

.
sly-u.5
for
101265892

.
ath-u.5
for
VPS41

.
gma-u.5
for
100804711

.
gma-u.5
for
100804340

.
vvi-u.5
for
100244792

.
ppo-u.5
for
7496468

.
ppo-u.5
for
7473001

.
mtr-u.5
for
25492355

.
osa-u.5
for
4335134

.
zma-u.5
for
100304345

.


Ortholog ID: 7021
Species ath gma gma sly sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi bdi nta nta
Symbol VPS41 LOC100804711 LOC100804340 tVPS41 LOC101265892 LOC4335134 LOC100304345 LOC103871567 LOC100244792 LOC7496468 LOC7473001 LOC25492355 LOC123055154 LOC123047353 LOC123428377 LOC107931930 LOC107932509 LOC106346353 LOC106415240 CHLRE_03g209281v5 LOC8070314 LOC102594325 LOC102582868 LOC102622104 LOC100845963 LOC104584692 LOC107824904 LOC107799899
Function* vacuolar protein sorting 41 vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog VPS41 vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog Vacuolar protein sorting-associated protein 41-like protein vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog uncharacterized protein vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog uncharacterized LOC104584692 vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 2
ath00541 Biosynthesis of various nucleotide sugars 2
ath01250 Biosynthesis of nucleotide sugars 2
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma04148 Efferocytosis 4
gma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03250 Viral life cycle - HIV-1 2
sly04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 3
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 5
bra04145 Phagosome 5
bra04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 3
vvi04145 Phagosome 2
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04142 Lysosome 3
mtr04814 Motor proteins 2
mtr04144 Endocytosis 2
mtr05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 6
tae04142 Lysosome 6
tae04145 Phagosome 6
tae00020 Citrate cycle (TCA cycle) 3
tae00785 Lipoic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 2
ghi04142 Lysosome 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 2
ghi04142 Lysosome 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 10
sot04145 Phagosome 10
sot04142 Lysosome 6
sot04144 Endocytosis 3
sot05100 Bacterial invasion of epithelial cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 5
sot04144 Endocytosis 5
sot05100 Bacterial invasion of epithelial cells 3
sot04141 Protein processing in endoplasmic reticulum 2
sot04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00052 Galactose metabolism 3
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 3
nta04148 Efferocytosis 3
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 3
nta04142 Lysosome 2
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837340 100804711 100804340 544040 101265892 4335134 100304345 103871567 100244792 7496468 7473001 25492355 123055154 123047353 123428377 107931930 107932509 106346353 106415240 5725010 8070314 102594325 102582868 102622104 100845963 104584692 107824904 107799899
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