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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   VPS41   vacuolar protein sorting 41 
 ath-r.7   VPS41   vacuolar protein sorting 41 
 ath-m.9   VPS41   vacuolar protein sorting 41 
 ath-e.2   VPS41   vacuolar protein sorting 41 
 ath-m.4.bio   VPS41   vacuolar protein sorting 41 
 ath-m.4.hor   VPS41   vacuolar protein sorting 41 
 ath-m.4.lig   VPS41   vacuolar protein sorting 41 
 ath-m.4.str   VPS41   vacuolar protein sorting 41 
 ath-m.4.tis   VPS41   vacuolar protein sorting 41 
 bra-r.6   103871567   vacuolar protein sorting-associated protein 41 homolog 
 bna-r.1   106346353   vacuolar protein sorting-associated protein 41 homolog 
 bna-r.1   106415240   vacuolar protein sorting-associated protein 41 homolog 
 ghi-r.1   107889151   vacuolar protein sorting-associated protein 41 homolog 
 ghi-r.1   107932509   vacuolar protein sorting-associated protein 41 homolog 
 ghi-r.1   107931930   vacuolar protein sorting-associated protein 41 homolog 
 cit-r.1   102622104   vacuolar protein sorting-associated protein 41 homolog 
 gma-u.5   100804711   vacuolar protein sorting-associated protein 41 homolog 
 gma-u.5   100804340   vacuolar protein sorting-associated protein 41 homolog 
 vvi-u.5   100244792   vacuolar protein sorting-associated protein 41 homolog 
 ppo-u.5   7496468   vacuolar protein sorting-associated protein 41 homolog 
 ppo-u.5   7473001   vacuolar protein sorting-associated protein 41 homolog 
 mtr-u.5   25492355   vacuolar protein sorting-associated protein 41 homolog 
 sly-u.5   tVPS41   VPS41 
 sly-u.5   101265892   vacuolar protein sorting-associated protein 41 homolog 
 sot-r.1   102594325   vacuolar protein sorting-associated protein 41 homolog 
 sot-r.1   102582868   vacuolar protein sorting-associated protein 41 homolog 
 nta-r.1   107824904   vacuolar protein sorting-associated protein 41 homolog 
 nta-r.1   107799899   vacuolar protein sorting-associated protein 41 homolog 
 nta-r.1   107783405   vacuolar protein sorting-associated protein 41 homolog 
 osa-u.5   4335134   vacuolar protein sorting-associated protein 41 homolog 
 zma-u.5   100304345   Vacuolar protein sorting-associated protein 41-like protein 
 tae-r.2   123055154   vacuolar protein sorting-associated protein 41 homolog 
 tae-r.2   123047353   vacuolar protein sorting-associated protein 41 homolog 
 tae-r.2   123191004   vacuolar protein sorting-associated protein 41 homolog 
 hvu-r.1   123428377   vacuolar protein sorting-associated protein 41 homolog 
 sbi-r.1   8070314   vacuolar protein sorting-associated protein 41 homolog 
 bdi-r.1   100845963   vacuolar protein sorting-associated protein 41 homolog 
 bdi-r.1   104584692   uncharacterized LOC104584692 
 cre-r.1   CHLRE_03g209281v5   uncharacterized protein 

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Top 50 coexpressed genes to VPS41 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VPS41 (ath-u.5 coexpression data)

CoexMap"837340"


athVPS41 | Entrez gene ID : 837340      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 2 1 2 1 2 2 3 1 1 3 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04148 [list] [network] Efferocytosis (53 genes)
GO BP
GO:0006623 [list] [network] protein targeting to vacuole  (31 genes)  TAS  
GO:0007034 [list] [network] vacuolar transport  (64 genes)  IMP  
GO:0009630 [list] [network] gravitropism  (101 genes)  IMP  
GO CC
GO:0030897 [list] [network] HOPS complex  (7 genes)  IDA  
GO:0009705 [list] [network] plant-type vacuole membrane  (117 genes)  IDA  
GO:0005768 [list] [network] endosome  (359 genes)  IDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_172297.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto_nucl 4,  cyto 2  (predict for NP_172297.2)
Subcellular
localization
TargetP
other 8  (predict for NP_172297.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
VPS41
ath-r.7
for
VPS41
ath-m.9
for
VPS41
ath-e.2
for
VPS41
ath-m.4.bio
for
VPS41
ath-m.4.hor
for
VPS41
ath-m.4.lig
for
VPS41
ath-m.4.str
for
VPS41
ath-m.4.tis
for
VPS41
bra-r.6
for
103871567
bna-r.1
for
106346353
bna-r.1
for
106415240
ghi-r.1
for
107889151
ghi-r.1
for
107932509
ghi-r.1
for
107931930
cit-r.1
for
102622104
gma-u.5
for
100804711
gma-u.5
for
100804340
vvi-u.5
for
100244792
ppo-u.5
for
7496468
ppo-u.5
for
7473001
mtr-u.5
for
25492355
sly-u.5
for
tVPS41
sly-u.5
for
101265892
sot-r.1
for
102594325
sot-r.1
for
102582868
nta-r.1
for
107824904
nta-r.1
for
107799899
nta-r.1
for
107783405
osa-u.5
for
4335134
zma-u.5
for
100304345
tae-r.2
for
123055154
tae-r.2
for
123047353
tae-r.2
for
123191004
hvu-r.1
for
123428377
sbi-r.1
for
8070314
bdi-r.1
for
100845963
bdi-r.1
for
104584692
cre-r.1
for
CHLRE_03g209281v5


Ortholog ID: 7021
Species ath bra bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta nta osa zma tae tae tae hvu sbi bdi bdi cre
Symbol VPS41 LOC103871567 LOC106346353 LOC106415240 LOC107932509 LOC107931930 LOC107891587 LOC102622104 LOC100804711 LOC100804340 LOC100244792 LOC7496468 LOC7473001 LOC25492355 tVPS41 LOC101265892 LOC102594325 LOC102582868 LOC107824904 LOC107799899 LOC107783405 LOC4335134 LOC100304345 LOC123055154 LOC123047353 LOC123191004 LOC123428377 LOC8070314 LOC100845963 LOC104584692 CHLRE_03g209281v5
Function* vacuolar protein sorting 41 vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog VPS41 vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog Vacuolar protein sorting-associated protein 41-like protein vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog vacuolar protein sorting-associated protein 41 homolog uncharacterized LOC104584692 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 2
ath00541 Biosynthesis of various nucleotide sugars 2
ath01250 Biosynthesis of nucleotide sugars 2
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 5
bra04145 Phagosome 5
bra04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 2
ghi04142 Lysosome 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 2
ghi04142 Lysosome 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 6
ghi03013 Nucleocytoplasmic transport 3
ghi03083 Polycomb repressive complex 2
ghi04148 Efferocytosis 2
ghi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00052 Galactose metabolism 3
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma04148 Efferocytosis 4
gma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 3
vvi04145 Phagosome 2
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04142 Lysosome 3
mtr04814 Motor proteins 2
mtr04144 Endocytosis 2
mtr05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03250 Viral life cycle - HIV-1 2
sly04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 10
sot04145 Phagosome 10
sot04142 Lysosome 6
sot04144 Endocytosis 3
sot05100 Bacterial invasion of epithelial cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 5
sot04144 Endocytosis 5
sot05100 Bacterial invasion of epithelial cells 3
sot04141 Protein processing in endoplasmic reticulum 2
sot04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 3
nta04148 Efferocytosis 3
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 3
nta04142 Lysosome 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 3
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 6
tae04142 Lysosome 6
tae04145 Phagosome 6
tae00020 Citrate cycle (TCA cycle) 3
tae00785 Lipoic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 7
tae04144 Endocytosis 4
tae05100 Bacterial invasion of epithelial cells 4
tae00190 Oxidative phosphorylation 3
tae04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04148 Efferocytosis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837340 103871567 106346353 106415240 107932509 107931930 107891587 102622104 100804711 100804340 100244792 7496468 7473001 25492355 544040 101265892 102594325 102582868 107824904 107799899 107783405 4335134 100304345 123055154 123047353 123191004 123428377 8070314 100845963 104584692 5725010
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